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Local Nextclade dataset and update strict syntax for nf >=26#132

Merged
jrudar merged 8 commits into
CFIA-NCFAD:devfrom
nhhaidee:nextclade_other_updates
May 28, 2026
Merged

Local Nextclade dataset and update strict syntax for nf >=26#132
jrudar merged 8 commits into
CFIA-NCFAD:devfrom
nhhaidee:nextclade_other_updates

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@nhhaidee

@nhhaidee nhhaidee commented May 26, 2026

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PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
    • If you've added a new tool - ensure that you've added the version info to a versions.yml and added it to the ch_versions channel in the workflow you added the tool to.
    • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
    • If necessary, also make a PR on the CFIA-NCFAD/nf-test-datasets repo
    • If appropriate, ensure that the illumina, nanopore and assemblies workflows have been updated to use the new tool.
    • Add or update an nf-test for the module/workflow/etc.
  • Ensure the test suite passes (nextflow run . -profile test_{illumina,nanopore},docker).
  • Ensure that the nf-test tests pass.
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@jrudar
jrudar merged commit b8257c6 into CFIA-NCFAD:dev May 28, 2026
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2 participants