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Course Project
Course Project
 
 
Images
Images
 
 
Midterm
Midterm
 
 
Weekly Assignments
Weekly Assignments
 
 
class_01_Gene_Sequences
class_01_Gene_Sequences
 
 
class_02_Complementary_Sequences_and_Transcription
class_02_Complementary_Sequences_and_Transcription
 
 
class_03_Translation_and_Intro_to_Bedtools
class_03_Translation_and_Intro_to_Bedtools
 
 
class_04_pairwise_sequence_alignment
class_04_pairwise_sequence_alignment
 
 
class_05_Multiple_Sequence_Alignment_and_Introduction_to_Read_Mapping
class_05_Multiple_Sequence_Alignment_and_Introduction_to_Read_Mapping
 
 
class_06_Epigenome_Roadmap_Browser_Highthrougput_Sequencing_and_RNA_Seq
class_06_Epigenome_Roadmap_Browser_Highthrougput_Sequencing_and_RNA_Seq
 
 
class_07_RNAseq_quantification_variation
class_07_RNAseq_quantification_variation
 
 
class_08_Principal_Component_Analysis
class_08_Principal_Component_Analysis
 
 
class_09_Kmeans_Clustering
class_09_Kmeans_Clustering
 
 
class_10_GO_enrichment
class_10_GO_enrichment
 
 
class_11_Transcription_Factor_Motifs
class_11_Transcription_Factor_Motifs
 
 
class_12_Regulatory_Elements_and_Chipseq_Data
class_12_Regulatory_Elements_and_Chipseq_Data
 
 
class_13_Finding_enhancers_and_promotors_using_BEDtools
class_13_Finding_enhancers_and_promotors_using_BEDtools
 
 
class_14_Introduction_to_GWAS_and_to_Course_Project
class_14_Introduction_to_GWAS_and_to_Course_Project
 
 
class_15_How_do_genome_sequences_vary_across_individuals_VCF_tools
class_15_How_do_genome_sequences_vary_across_individuals_VCF_tools
 
 
class_15_Introduction_to_GWAS_II_and_to_Course_Project
class_15_Introduction_to_GWAS_II_and_to_Course_Project
 
 
class_16_UK_Biobank_GWAS_Catalog_and_Exome_Sequencing
class_16_UK_Biobank_GWAS_Catalog_and_Exome_Sequencing
 
 
class_17_Collaborative_Programming_Project_II
class_17_Collaborative_Programming_Project_II
 
 
class_18_Visualizing_Genetic_Variation_Across_Human_Populations
class_18_Visualizing_Genetic_Variation_Across_Human_Populations
 
 
class_19_GWAS_and_Course_Review
class_19_GWAS_and_Course_Review
 
 
datasets
datasets
 
 
helpers
helpers
 
 
setup_2021
setup_2021
 
 
.DS_Store
.DS_Store
 
 
.gitattributes
.gitattributes
 
 
.gitignore
.gitignore
 
 
.nbgrader.log
.nbgrader.log
 
 
Python_Basics_Weeks_1_2.ipynb
Python_Basics_Weeks_1_2.ipynb
 
 
Python_and_Unix_Commands_Weeks_1_4.ipynb
Python_and_Unix_Commands_Weeks_1_4.ipynb
 
 
README
README
 
 
Unix_Basics.ipynb
Unix_Basics.ipynb
 
 

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Google Doc Syllabus:
https://docs.google.com/document/d/1rKqYYBDQ3acNMBLqyHjaJ_7cvYAhKkxfoAUbayd_5ZQ/edit?ts=595d5eb4

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