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binchicken build silently downloads CheckM database via wget in background, but the guide does not mention it

Status: Open.

#222 In AroneyS/binchicken;

· whiteofalien opened on Aug 7, 2026

Crashing assemblies: HPC resource management, RAM limits, and more

Status: Open.

#217 In AroneyS/binchicken;

· DBrache opened on Apr 29, 2026

ERROR coverm: Failed to create test file in bam cache directory: No such device or address (os error 6)

Status: Open.

#214 In AroneyS/binchicken;

· yanma0782-blip opened on Apr 6, 2026

"orphan" samples in co-assemble

Status: Open.

#213 In AroneyS/binchicken;

· katkat-ri opened on Mar 16, 2026

How to get the final bins and iterate the bins?

Status: Open.

#211 In AroneyS/binchicken;

· LiZhihua1982 opened on Feb 5, 2026

BinChicken single run with 3 metagenomes did not finish after 72h: expected runtime or potential misconfiguration?

Status: Open.

#203 In AroneyS/binchicken;

· xtan824 opened on Jan 21, 2026

Error launching 'kingfisher'

Status: Open.

#201 In AroneyS/binchicken;

· TSaumaS opened on Dec 16, 2025

single: --run-aviary runs a lot of attempts by default

Status: Open.

#194 In AroneyS/binchicken;

· wwood opened on Nov 18, 2025

aviary db not found

Status: Open.

#189 In AroneyS/binchicken;

· etr-asu opened on Sep 1, 2025

Illegal instruction error singlem_pipe_reads

Status: Open.

#177 In AroneyS/binchicken;

· Anna-MarieSeelen opened on Jun 30, 2025

Binchicken Single - No MAGs

Status: Open.

#166 In AroneyS/binchicken;

· mpdoane2 opened on Feb 14, 2025

singlem issue

Status: Open.

#159 In AroneyS/binchicken;

· francesco-ricci opened on Jan 12, 2025