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Pilot dual-layer output timestamps for integrator and sequence_groups. CI #146: Commit 87de1fd pushed by 000specific
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integrator orthogroups: add Annogroups_Pfam/GO/PANTHER columns to all… CI #145: Commit 157d1ef pushed by 000specific
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GIGANTIC: integrator orthogroups blocks, phylonames NCBI taxonomy, se… CI #144: Commit 1d8c668 pushed by 000specific
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resolve_groups: Leonid updates — 4-structure deconvolution and annota… CI #143: Commit 2690186 pushed by 000specific
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secretome: rename STEP_1 build_evidence_table workflow files CI #142: Commit 2087100 pushed by 000specific
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ocl: relocate aggregate run summary from RUN_SUMMARY.md (root) into O… CI #141: Commit 63ec79a pushed by 000specific
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sequence_groups_X_species: add annogroups + gene_families producer ad… CI #140: Commit cd30b65 pushed by 000specific
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server + conventions: list one_direction_homologs on the data server;… CI #139: Commit bdc05f6 pushed by 000specific
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sequence_groups_X_species: new subproject — resolve any sequence-grou… CI #138: Commit 7757e96 pushed by 000specific
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server: fix pkill self-match footgun in login-node restart guide CI #137: Commit 592dc23 pushed by 000specific
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zoo: consolidate non-GIGANTIC work into a holding subproject CI #136: Commit 6b94d96 pushed by 000specific
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annogroups: add 9 more source parsers (12 sources total), all validat… CI #135: Commit e288342 pushed by 000specific
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server/capture: fix on-demand "Save Chat!" (003) for ancestor-launche… CI #134: Commit 4adeff9 pushed by 000specific
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server: add TSV/CSV -> Excel conversion (EXCEL button + standalone do… CI #133: Commit 1e795b9 pushed by 000specific
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integrator: add BLOCK_ambiguous_nodes_X_annogroups (deconvolution -> … CI #132: Commit 5c67e3f pushed by 000specific
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annogroups: add panther + go sources, GO names + GO-aspect split columns CI #131: Commit 0482492 pushed by 000specific
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server: add moroz_innovations to allowlist; run server in login-node … CI #130: Commit f4fcb77 pushed by 000specific
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genomesDB STEP_4: add per-species sequence-table TSVs + fix manifest CI #129: Commit 9c9f79c pushed by 000specific
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annogroups: Composite Clades + Species Tree Deconvolution (generalize… CI #128: Commit 1115309 pushed by 000specific
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server publisher: publish only the most recent RUN per block/step CI #127: Commit a5784a6 pushed by 000specific
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phylum-composition classes: annogroups + annotations_X_ocl + annotati… CI #126: Commit 79044c6 pushed by 000specific
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annotations_X_ocl: update upload_manifest for the 4-type framework CI #125: Commit dcc5358 pushed by 000specific
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annotations_X_orthogroups: read annogroups directly, drop OCL dependency CI #124: Commit b7e6288 pushed by 000specific
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gitignore: re-exclude RUN execution artifacts under research_ai/ tool… CI #123: Commit 6799a5d pushed by 000specific
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annogroups: design spec + Phase 1 cross-compaction handoff CI #122: Commit 8675af4 pushed by 000specific
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