Hi,
As indicated in the paper, RobustTAD can be applied to detect TADs for low coverage data, such as 62.5M.
I would like to inquire about the appropriate value for the "resol" parameter. Should I maintain the current setting of 5000, or would it be better to adjust it to a higher value, such as 50000?
And if it is set to 50000, should I increase the minW and maxW to 5x and 12x of the resolution?
Best,
Junfeng
Hi,
As indicated in the paper, RobustTAD can be applied to detect TADs for low coverage data, such as 62.5M.
I would like to inquire about the appropriate value for the "resol" parameter. Should I maintain the current setting of 5000, or would it be better to adjust it to a higher value, such as 50000?
And if it is set to 50000, should I increase the minW and maxW to 5x and 12x of the resolution?
Best,
Junfeng