From 4618bce566d64796644e2761dfadcd41569c0c77 Mon Sep 17 00:00:00 2001 From: ConorFWild <41680328+ConorFWild@users.noreply.github.com> Date: Fri, 29 May 2026 14:41:08 +0100 Subject: [PATCH] Fix for issue 2247 --- src/ligand_neighbourhood_alignment/update.py | 1 + tests/test_integration.py | 4 ++-- 2 files changed, 3 insertions(+), 2 deletions(-) diff --git a/src/ligand_neighbourhood_alignment/update.py b/src/ligand_neighbourhood_alignment/update.py index ba5f568..62803dc 100644 --- a/src/ligand_neighbourhood_alignment/update.py +++ b/src/ligand_neighbourhood_alignment/update.py @@ -231,6 +231,7 @@ def perform_all_alignments( .assembly ], ) + if (datasets[dtag].mtz != "None") and (datasets[dtag].mtz is not None): mtz_path = datasets[dtag].mtz if mtz_path and mtz_path != "None": xmap = read_xmap_from_mtz(mtz_path, "2Fo-Fc") diff --git a/tests/test_integration.py b/tests/test_integration.py index 23f01dd..30bedbf 100644 --- a/tests/test_integration.py +++ b/tests/test_integration.py @@ -39,7 +39,7 @@ def test_collator_upload_1( def test_aligner_upload_1(constants, upload_1_dir): log = str(Path(constants.TEST_DIR) / "aligner.log") - a = Aligner(constants.TEST_DIR, log_file=log, log_level=0) + a = Aligner(constants.TEST_DIR, ) logger = a.logger utils.LOG = logger @@ -97,7 +97,7 @@ def test_collator_upload_2(constants, config_2_file, upload_2_dir, uploads_dir, def test_aligner_upload_2(constants): log = str(Path(constants.TEST_DIR) / "aligner.log") - a = Aligner(constants.TEST_DIR, log_file=log, log_level=0) + a = Aligner(constants.TEST_DIR, ) logger = a.logger utils.LOG = logger