From 344064f8f2c434803861f7c29b0d0e71bb1d3131 Mon Sep 17 00:00:00 2001
From: Max Winokan <36866506+mwinokan@users.noreply.github.com>
Date: Thu, 14 Dec 2023 14:39:58 +0000
Subject: [PATCH] update align.py command

---
 USER-GUIDE.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/USER-GUIDE.md b/USER-GUIDE.md
index 9b5bc5b5..159cda8d 100644
--- a/USER-GUIDE.md
+++ b/USER-GUIDE.md
@@ -89,7 +89,7 @@ python /dls/science/groups/i04-1/conor_dev/xchem-align/scripts/collate.py -c <yo
 The next step is performing local alignments of your ligand bound models and their associated crystallographic maps.
 
 ```commandline
-python /dls/science/groups/i04-1/conor_dev/xchem-align/scripts/align.py -d <your upload directory> -x <your xtalforms file> -a <your assemblies file>
+python /dls/science/groups/i04-1/conor_dev/xchem-align/scripts/align.py -d <your upload directory> -x <your crystalforms.yaml file>
 ```
 
 ## 5. Upload to Fragalysis