doctor should suggest --with flags when checker tools are missing

[wtthornton]

Summary

When tapps-mcp doctor detects missing checker tools (ruff, mypy, bandit, radon, vulture, pylint, pip-audit), the suggested fix is:

uv tool install tapps-mcp --with ruff

This doesn't work because tapps-mcp is not on PyPI — it's installed from a local/editable path. The user has to know to pass the original install path.

Suggested improvement

Doctor should:

1. Read uv-receipt.toml to determine the original install source
2. Suggest the correct command, e.g.:

   uv tool install --editable /path/to/tapps-mcp --with ruff --with mypy ... --force
   

3. Or better: suggest a single command that adds all missing tools at once rather than one per tool

Context

During setup, uv tool install tapps-mcp --with ruff failed with "not found in the package registry." The fix required reading uv-receipt.toml manually to find the editable path, then running a combined --with command with --force.