---------------------------------------------------------------------------
FileNotFoundError Traceback (most recent call last)
o:\users\tyler\code\prairie_view\notebooks\2021-04-20_calc_offset.py in
----> 2 from prairie_view.files import read_reshape_and_copy
3 from glob import glob
4
5 ref_zseries_dir = r"E:\tyler\2021-04-20_wt-chrmine_6dpf_6f\fish1\TSeries-zstack-motion-correction-etl-052"
6
\\oak-smb-deissero.stanford.edu\groups\deissero\users\tyler\code\prairie_view\prairie_view\files.py in <module>
----> 1 import glia
2 import matplotlib.pyplot as plt, numpy as np
3
4 def read_and_copy(index_path_tuple, k=lambda x: x):
5 index, path = index_path_tuple
~\Miniconda3\envs\tyler\lib\site-packages\glia\__init__.py in <module>
1 from .analysis import *
----> 2 from .artificial import *
3 from .machine_learning import *
4 from .eyecandy import *
5 from .files import *
~\Miniconda3\envs\tyler\lib\site-packages\glia\artificial.py in <module>
6 import matplotlib.pyplot as plt
7 from typing import List, Any, Union
----> 8 from .functional import f_filter, f_map, f_reduce
9 from scipy import signal
10 from glia.types import Unit
~\Miniconda3\envs\tyler\lib\site-packages\glia\functional.py in <module>
8 from multiprocessing import Pool
9 from multiprocessing.pool import ThreadPool
---> 10 from .config import processes
11 import glia.config as config
12 from tqdm.auto import tqdm
~\Miniconda3\envs\tyler\lib\site-packages\glia\config.py in <module>
34 resource_path = '/'.join(('..', 'resources', '3brain_channel_map.npy')) # Do not use os.path.join()
35 # or for a file-like stream:
---> 36 channel_map_file = pkg_resources.resource_stream(resource_package, resource_path)
37
38 channel_map_3brain = np.load(channel_map_file)
~\Miniconda3\envs\tyler\lib\site-packages\pkg_resources\__init__.py in resource_stream(self, package_or_requirement, resource_name)
1147 def resource_stream(self, package_or_requirement, resource_name):
1148 """Return a readable file-like object for specified resource"""
-> 1149 return get_provider(package_or_requirement).get_resource_stream(
1150 self, resource_name
1151 )
~\Miniconda3\envs\tyler\lib\site-packages\pkg_resources\__init__.py in get_resource_stream(self, manager, resource_name)
1621
1622 def get_resource_stream(self, manager, resource_name):
-> 1623 return open(self._fn(self.module_path, resource_name), 'rb')
1624
1625 def _get(self, path):
FileNotFoundError: [Errno 2] No such file or directory: 'C:\\Users\\User\\Miniconda3\\envs\\tyler\\lib\\site-packages\\glia\\..\\resources\\3brain_channel_map.npy'
pip install git+https://github.com/tbenst/glia.gitshould work