Hi, I've developed an extension for using metaQUAST to evaluate contig assembly:
https://github.com/zoey-rw/sbx_metaquast
But it seems to only work if I include the absolute path to the metaquast.py program, downloaded separately. The quast package is already listed in the environment file, but without the absolute path, I still get errors that metaquast.py doesn't exist.
It also could probably be modified to create one report for all contigs (rather than run for each sample separately), but I wasn't sure how to concatenate all the file names in the Snakemake rule.
Hi, I've developed an extension for using metaQUAST to evaluate contig assembly:
https://github.com/zoey-rw/sbx_metaquast
But it seems to only work if I include the absolute path to the metaquast.py program, downloaded separately. The quast package is already listed in the environment file, but without the absolute path, I still get errors that metaquast.py doesn't exist.
It also could probably be modified to create one report for all contigs (rather than run for each sample separately), but I wasn't sure how to concatenate all the file names in the Snakemake rule.