Follow the flow here: https://github.com/gbouras13/phold/blob/main/run_pharokka_and_phold_and_phynteny.ipynb to include pharokka for initial annotation and phold plot for visualizations (and maybe phynteny for some ML fun)
Follow the flow here: https://github.com/gbouras13/phold/blob/main/run_pharokka_and_phold_and_phynteny.ipynb to include pharokka for initial annotation and phold plot for visualizations (and maybe phynteny for some ML fun)