statsthinking21-R/Dockerfile at master · sotnir/statsthinking21-R · GitHub

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# Dockerfile for ThinkStats

FROM rocker/tidyverse
MAINTAINER Russ Poldrack <poldrack@gmail.com>

RUN sudo apt-get clean all
RUN sudo apt-get update
RUN sudo apt-get dist-upgrade -y
RUN sudo apt-get autoremove
RUN apt-get install -y make git ssh
RUN apt-get install  -y jags
# RUN apt-get install -y gsl-bin libgsl-dev libv8-3.14.5
RUN apt-get install -y gsl-bin libgsl-dev libnode-dev
RUN apt-get install  -y libudunits2-0
RUN apt-get install -y texlive-full

# installing R packages

RUN echo 'install.packages(c( \
"emmeans", \
"kableExtra", \
"MASS", \
"ggplot2", \
"tidyr", \
"readr", \
"mapproj", \
"pander", \
"DiagrammeR", \
"caret", \
"modelr", \
"pwr", \
"BayesFactor", \
"boot", \
"dplyr", \
"cowplot", \
"brms", \
"tidyverse", \
"reshape2", \
"NHANES", \
"fivethirtyeight", \
"gmodels", \
"sfsmisc", \
"bookdown",\
"ggfortify"), \
  repos="http://cran.us.r-project.org", dependencies=TRUE)' > /tmp/packages.R

# lme4 dropped repos https://cran.us.r-project.org

RUN echo 'install.packages("lme4", dependencies=TRUE)' >> /tmp/packages.R

# lmerTest repos updated to https://cran.rstudio.com

RUN echo 'install.packages("lmerTest", repos = "https://cran.rstudio.com", dependencies = TRUE)' >> /tmp/packages.R && Rscript /tmp/packages.R

# fiftystater was removed from CRAN so must be installed from the archive

RUN echo 'install.packages("https://cran.r-project.org/src/contrib/Archive/fiftystater/fiftystater_1.0.1.tar.gz",\
  repos=NULL,dependencies=TRUE)' > /tmp/packages2.R

# BayesMed was removed from CRAN so must be installed from the archive
RUN echo 'install.packages(c( \
"R2jags", \
"QRM", \
"polspline", \
"MCMCpack"), \
  repos="http://cran.us.r-project.org", dependencies=TRUE)' >> /tmp/packages2.R

RUN echo 'install.packages("https://cran.r-project.org/src/contrib/Archive/BayesMed/BayesMed_1.0.1.tar.gz",\
  repos=NULL,dependencies=TRUE)' >> /tmp/packages2.R

# install lsmeans_2.27-62 from archive
RUN echo 'install.packages("https://cran.r-project.org/src/contrib/Archive/lsmeans/lsmeans_2.27-62.tar.gz",\
  repos=NULL,dependencies=TRUE)' >> /tmp/packages2.R  && Rscript /tmp/packages2.R

CMD ["/bin/bash"]