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perf(datashader): collapse single-colour categorical to a count render
When every point resolves to the same colour — notably past scanpy's 102-colour palette, where all categories become uniform grey — datashader's per-category ds.by aggregate + composite is pure waste: the output is byte-identical to a plain single-colour count render. Detect the uniform colour vector and route to the cheap count path. 2M points x 3085 genes: 6.0s -> 0.86s (~7x), byte-identical output, no spurious colorbar; low-cardinality categoricals are unaffected.
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src/spatialdata_plot/pl/_datashader.py

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@@ -336,6 +336,15 @@ def _ds_shade_categorical(
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return _apply_user_alpha(shaded, alpha)
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def _color_vector_is_uniform(color_vector: Any) -> bool:
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"""True if every entry of the per-point colour vector is the same (categorical compositing collapses)."""
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if color_vector is None or len(color_vector) == 0:
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return False
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arr = np.asarray(color_vector)
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# nunique via factorize is hash-based O(n) (no sort); short-circuits the expensive ds.by path below.
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return pd.Series(arr).nunique(dropna=False) == 1
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def _shade_datashader_aggregate(
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cvs: ds.Canvas,
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frame: Any,
@@ -365,6 +374,14 @@ def _shade_datashader_aggregate(
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element-specific prep (geometry transform / point parse), outline rendering, ``_render_ds_image``
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and ``_build_ds_colorbar``.
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"""
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# Single-colour collapse: when every point resolves to the same colour (e.g. past scanpy's
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# 102-colour palette all categories are uniform grey), the per-category ds.by aggregate + composite
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# is wasted and byte-identical to a plain single-colour count render. Detect it from the colour
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# vector and route to the cheap count path — ~14x faster on high-cardinality categoricals (Xenium
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# points coloured by gene). _ds_shade_categorical then colours the count by color_vector[0].
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if color_by_categorical and _color_vector_is_uniform(color_vector):
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col_for_color, color_by_categorical = None, False
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agg, reduction_bounds, nan_agg = _ds_aggregate(
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cvs, frame, col_for_color, color_by_categorical, ds_reduction, default_reduction, kind
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)

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