Hello,
Thank you for making this package.
I can't get it to work.
On a Rhel7 server, I get the following errors:
`
*** caught segfault ***
address (nil), cause 'unknown'
Traceback:
1: CreateCognacRunData(geneEnv, featureFiles, fastaFiles, faaPath)
2: CreateGeneDataEnv(featureFiles, fastaFiles, genomeIds, tempDir)
3: cognac(fastaDir = "/path/to/Genomes", featureDir = "/path/to/GFF")
An irrecoverable exception occurred. R is aborting now ...
`
on my macbook, Rstudio crashes immediately when running cognac() with the following error:
Error: C stack usage is too close to the limit
In both cases, I am only asking the program to process 10 genomes.
EDIT: I noticed a similar issue was raised and traced back to ambiguous nucleotides in the sequence. Can you confirm this is a likely cause and whether this bug will be fixed?
Hello,
Thank you for making this package.
I can't get it to work.
On a Rhel7 server, I get the following errors:
`
*** caught segfault ***
address (nil), cause 'unknown'
Traceback:
1: CreateCognacRunData(geneEnv, featureFiles, fastaFiles, faaPath)
2: CreateGeneDataEnv(featureFiles, fastaFiles, genomeIds, tempDir)
3: cognac(fastaDir = "/path/to/Genomes", featureDir = "/path/to/GFF")
An irrecoverable exception occurred. R is aborting now ...
`
on my macbook, Rstudio crashes immediately when running cognac() with the following error:
Error: C stack usage is too close to the limitIn both cases, I am only asking the program to process 10 genomes.
EDIT: I noticed a similar issue was raised and traced back to ambiguous nucleotides in the sequence. Can you confirm this is a likely cause and whether this bug will be fixed?