Container (Docker / Singularity) Availability

[brucemoran]

Hi,

do you have a container for CALDER?

Thanks,

Bruce

[mmyers1]

No, we do not currently have a container available for CALDER.

[brucemoran]

OK, I tried making one, there are serious dependency issues mostly because pyclone is python2.

Not your software I appreciate, but yours relies on pyclone and basically makes an install via conda impossible IMO.

A shame, was looking forward to trying CALDER.

Thanks for your reply,

Bruce

[mmyers1]

I understand your frustration -- between Pyclone requiring Python 2 and Absence-Aware Clustering requiring Python 3 (not to mention that AAC uses an option only available in Pyclone 13.1, which is only packaged for Linux on Anaconda), there are a lot of pipeline-breaking issues with the preprocessing. Hopefully we get a chance soon to rework the clustering scripts/procedure, perhaps using the recently released Pyclone-VI, and can then revisit creating a Docker image for CALDER.