DEV.md

Installation

User as a package

pip install git+https://github.com/rae-gh/map-plane.git

python -m streamlit run streamlit/app_peptide.py

Dev

conda env is called phd and created with python 3.14

conda create -n map-plane-env -c conda-forge python=3.14
conda activate map-plane-env
conda install -c conda-forge dssp
python -m pip install gemmi

# Dev - all of it
python -m pip install -e ".[test,dev,ml,analysis,app]"

pre-commit install

# ML training
python -m pip install -e ".[ml]"

# other
python -m pip install -e ".[test]"  # installs package plus pytest
python -m pip install -e "."        # installs package only