@Kev1CO congratulations on this impressive work.
When trying to run the examples, I encountered a few issues:
get_cmap has been moved from matplotlib.cm to matplotlib.pyplot since version 3.8.0. This was a problem in bioptim and pyorerun
- please add
scikit-optimize to your environment.yml
examples/fes_multibody/cycling/cycling_bayesian_mhe.py fails due to missing the result/initial_guess pickle files- If you could add a
pyproject.toml file to the project root it would make installation easier. I did this locally and did a pip install -e ., because I encountered some relative pathing issues when running from the examples directory.
- Finally, it's pretty straight-forward to run the examples, but a short section demonstrating execution of just one example would be helpful.
@Kev1CO congratulations on this impressive work.
When trying to run the examples, I encountered a few issues:
get_cmaphas been moved frommatplotlib.cmtomatplotlib.pyplotsince version3.8.0. This was a problem inbioptimandpyorerunpyorerunas per fix: matplotlib update pyorerun#107 although it does not appear to be released yetscikit-optimizeto yourenvironment.ymlexamples/fes_multibody/cycling/cycling_bayesian_mhe.pyfails due to missing theresult/initial_guess pickle filespyproject.tomlfile to the project root it would make installation easier. I did this locally and did apip install -e ., because I encountered some relative pathing issues when running from the examples directory.