diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml index 013a740..0f14800 100644 --- a/.github/workflows/R-CMD-check.yaml +++ b/.github/workflows/R-CMD-check.yaml @@ -1,10 +1,12 @@ # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples -# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help +# JAGS variant: installs JAGS on macOS and Windows (Linux gets it via setup-r-dependencies +# system requirements). Use for packages that depend on rjags/runjags/jagsUI/R2jags. on: push: branches: [main, master] pull_request: branches: [main, master] + name: R-CMD-check permissions: read-all @@ -20,14 +22,10 @@ jobs: matrix: config: - {os: macos-latest, r: 'release'} - - {os: windows-latest, r: 'release'} - # use 4.0 or 4.1 to check with rtools40's older compiler - - {os: windows-latest, r: 'oldrel-4'} - - - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} - - {os: ubuntu-latest, r: 'release'} - - {os: ubuntu-latest, r: 'oldrel-1'} + - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} + - {os: ubuntu-latest, r: 'release'} + - {os: ubuntu-latest, r: 'oldrel-1'} env: GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} @@ -38,6 +36,23 @@ jobs: - uses: r-lib/actions/setup-pandoc@v2 + - name: Install JAGS (macOS) + if: runner.os == 'macOS' + run: | + curl -o wjags.pkg -L0 -k --url https://downloads.sourceforge.net/project/mcmc-jags/JAGS/4.x/Mac%20OS%20X/JAGS-4.3.2.pkg + sudo installer -pkg wjags.pkg -target / + rm wjags.pkg + + - name: Download JAGS (Windows) + if: runner.os == 'Windows' + run: (New-Object System.Net.WebClient).DownloadFile('https://github.com/poissonconsulting/jags-win/raw/main/JAGS-4.3.1.exe', 'C:\JAGS-4.3.1.exe') + shell: powershell + + - name: Install JAGS (Windows) + if: runner.os == 'Windows' + run: C:\JAGS-4.3.1.exe /S + shell: cmd + - uses: r-lib/actions/setup-r@v2 with: r-version: ${{ matrix.config.r }} diff --git a/.github/workflows/rhub.yaml b/.github/workflows/rhub.yaml deleted file mode 100644 index 74ec7b0..0000000 --- a/.github/workflows/rhub.yaml +++ /dev/null @@ -1,95 +0,0 @@ -# R-hub's generic GitHub Actions workflow file. It's canonical location is at -# https://github.com/r-hub/actions/blob/v1/workflows/rhub.yaml -# You can update this file to a newer version using the rhub2 package: -# -# rhub::rhub_setup() -# -# It is unlikely that you need to modify this file manually. - -name: R-hub -run-name: "${{ github.event.inputs.id }}: ${{ github.event.inputs.name || format('Manually run by {0}', github.triggering_actor) }}" - -on: - workflow_dispatch: - inputs: - config: - description: 'A comma separated list of R-hub platforms to use.' - type: string - default: 'linux,windows,macos' - name: - description: 'Run name. You can leave this empty now.' - type: string - id: - description: 'Unique ID. You can leave this empty now.' - type: string - -jobs: - - setup: - runs-on: ubuntu-latest - outputs: - containers: ${{ steps.rhub-setup.outputs.containers }} - platforms: ${{ steps.rhub-setup.outputs.platforms }} - - steps: - # NO NEED TO CHECKOUT HERE - - uses: r-hub/actions/setup@v1 - with: - config: ${{ github.event.inputs.config }} - id: rhub-setup - - linux-containers: - needs: setup - if: ${{ needs.setup.outputs.containers != '[]' }} - runs-on: ubuntu-latest - name: ${{ matrix.config.label }} - strategy: - fail-fast: false - matrix: - config: ${{ fromJson(needs.setup.outputs.containers) }} - container: - image: ${{ matrix.config.container }} - - steps: - - uses: r-hub/actions/checkout@v1 - - uses: r-hub/actions/platform-info@v1 - with: - token: ${{ secrets.RHUB_TOKEN }} - job-config: ${{ matrix.config.job-config }} - - uses: r-hub/actions/setup-deps@v1 - with: - token: ${{ secrets.RHUB_TOKEN }} - job-config: ${{ matrix.config.job-config }} - - uses: r-hub/actions/run-check@v1 - with: - token: ${{ secrets.RHUB_TOKEN }} - job-config: ${{ matrix.config.job-config }} - - other-platforms: - needs: setup - if: ${{ needs.setup.outputs.platforms != '[]' }} - runs-on: ${{ matrix.config.os }} - name: ${{ matrix.config.label }} - strategy: - fail-fast: false - matrix: - config: ${{ fromJson(needs.setup.outputs.platforms) }} - - steps: - - uses: r-hub/actions/checkout@v1 - - uses: r-hub/actions/setup-r@v1 - with: - job-config: ${{ matrix.config.job-config }} - token: ${{ secrets.RHUB_TOKEN }} - - uses: r-hub/actions/platform-info@v1 - with: - token: ${{ secrets.RHUB_TOKEN }} - job-config: ${{ matrix.config.job-config }} - - uses: r-hub/actions/setup-deps@v1 - with: - job-config: ${{ matrix.config.job-config }} - token: ${{ secrets.RHUB_TOKEN }} - - uses: r-hub/actions/run-check@v1 - with: - job-config: ${{ matrix.config.job-config }} - token: ${{ secrets.RHUB_TOKEN }} diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml index fefc52e..9882260 100644 --- a/.github/workflows/test-coverage.yaml +++ b/.github/workflows/test-coverage.yaml @@ -6,7 +6,7 @@ on: pull_request: branches: [main, master] -name: test-coverage +name: test-coverage.yaml permissions: read-all