From a26952cb1a253d5d402ba146de4a143a114b3aaf Mon Sep 17 00:00:00 2001
From: Roman Bushuiev <37666912+roman-bushuiev@users.noreply.github.com>
Date: Sun, 27 Oct 2024 11:44:06 +0100
Subject: [PATCH 1/2] Update setup_env.sh

---
 scripts/setup_env.sh | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/scripts/setup_env.sh b/scripts/setup_env.sh
index 2562a8d..324bd9f 100644
--- a/scripts/setup_env.sh
+++ b/scripts/setup_env.sh
@@ -19,6 +19,7 @@ pip install plotly
 pip install fair-esm==2.0.0
 pip install ankh==1.10.0
 pip install tables
+pip install h5py
 pip install tqdm
 pip install py-mcc-f1
 pip install inquirer
@@ -39,5 +40,6 @@ fi
 git clone https://github.com/tttianhao/CLEAN.git
 cd CLEAN/app/src
 echo "export PATH=\$PATH:$(pwd)" >> ~/.bashrc
+echo "export PYTHONPATH=\$PYTHONPATH:$(pwd)" >> ~/.bashrc
 source ~/.bashrc
 cd $cwd

From 51d86dbd27e43537b3f6753b48c45100c0894d17 Mon Sep 17 00:00:00 2001
From: Roman Bushuiev <37666912+roman-bushuiev@users.noreply.github.com>
Date: Sun, 27 Oct 2024 11:45:12 +0100
Subject: [PATCH 2/2] Update README.md

---
 README.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/README.md b/README.md
index 6c5c282..14ce548 100644
--- a/README.md
+++ b/README.md
@@ -87,7 +87,7 @@ git clone https://github.com/pluskal-lab/TerpeneMiner.git
 cd TerpeneMiner
 . scripts/setup_env.sh
 conda activate terpene_miner
-pip install .
+pip install -e .
 ```
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