The problems I mentioned in previous tests are still present.
The Dash molstar button with slider and the energy graph values are not synchronized. I think it would be better to rely on this single button.
When generating the energy matrix for membrane proteins, applying a POP filter could produce cleaner outputs. Similarly, applying such filtering to the network analysis would improve the results:
Also, from frame 1 to frame 26, the lipid bilayer is increasingly distorted. @osercinoglu , Is this behavior expected?
frame 1:
last frame 26:
While browsing the residue table for ligands, I noticed that manually finding the desired residue was time-consuming. It would be very helpful to add a search option that allows direct text-based queries for residues.
The problems I mentioned in previous tests are still present.
The Dash molstar button with slider and the energy graph values are not synchronized. I think it would be better to rely on this single button.
When generating the energy matrix for membrane proteins, applying a POP filter could produce cleaner outputs. Similarly, applying such filtering to the network analysis would improve the results:
Also, from frame 1 to frame 26, the lipid bilayer is increasingly distorted. @osercinoglu , Is this behavior expected?
frame 1:
last frame 26:
While browsing the residue table for ligands, I noticed that manually finding the desired residue was time-consuming. It would be very helpful to add a search option that allows direct text-based queries for residues.