Output.txt

/Library/Java/JavaVirtualMachines/jdk1.8.0_65.jdk/Contents/Home/bin/java -Didea.launcher.port=7534 "-Didea.launcher.bin.path=/Applications/IntelliJ IDEA CE.app/Contents/bin" -Dfile.encoding=UTF-8 -classpath "/Library/Java/JavaVirtualMachines/jdk1.8.0_65.jdk/Contents/Home/lib/ant-javafx.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_65.jdk/Contents/Home/lib/dt.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_65.jdk/Contents/Home/lib/javafx-mx.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_65.jdk/Contents/Home/lib/jconsole.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_65.jdk/Contents/Home/lib/packager.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_65.jdk/Contents/Home/lib/sa-jdi.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_65.jdk/Contents/Home/lib/tools.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_65.jdk/Contents/Home/jre/lib/charsets.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_65.jdk/Contents/Home/jre/lib/deploy.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_65.jdk/Contents/Home/jre/lib/javaws.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_65.jdk/Contents/Home/jre/lib/jce.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_65.jdk/Contents/Home/jre/lib/jfr.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_65.jdk/Contents/Home/jre/lib/jfxswt.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_65.jdk/Contents/Home/jre/lib/jsse.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_65.jdk/Contents/Home/jre/lib/management-agent.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_65.jdk/Contents/Home/jre/lib/plugin.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_65.jdk/Contents/Home/jre/lib/resources.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_65.jdk/Contents/Home/jre/lib/rt.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_65.jdk/Contents/Home/jre/lib/ext/cldrdata.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_65.jdk/Contents/Home/jre/lib/ext/dnsns.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_65.jdk/Contents/Home/jre/lib/ext/jaccess.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_65.jdk/Contents/Home/jre/lib/ext/jfxrt.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_65.jdk/Contents/Home/jre/lib/ext/localedata.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_65.jdk/Contents/Home/jre/lib/ext/nashorn.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_65.jdk/Contents/Home/jre/lib/ext/sunec.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_65.jdk/Contents/Home/jre/lib/ext/sunjce_provider.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_65.jdk/Contents/Home/jre/lib/ext/sunpkcs11.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_65.jdk/Contents/Home/jre/lib/ext/zipfs.jar:/Users/kenho/IdeaProjects/TestSSBD/out/production/TestSSBD:/Users/kenho/IdeaProjects/TestSSBD/lib/json-20160212.jar:/Users/kenho/IdeaProjects/TestSSBD/lib/junit-4.10.jar:/Users/kenho/IdeaProjects/TestSSBD/lib/json-simple-1.1.1.jar:/Users/kenho/IdeaProjects/TestSSBD/lib/hamcrest-core-1.1.jar:/Applications/IntelliJ IDEA CE.app/Contents/lib/idea_rt.jar" com.intellij.rt.execution.application.AppMain TestSSBD

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Output from Server ....

Meta Limit :20
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No. 1
key: address value: 6-2-3 Furuedai, Suita, Osaka 565-0874, Japan
key: dblink value: http://www.ncbi.nlm.nih.gov/pubmed/20012222
key: organism value: E. coli
key: citation value: null
key: description value: quantitative single molecule dynamics of Min proteins (MinEE, MinDEE, MinDEED, and MinD) in E. coli wild-type
key: title value: BDML file for quantitative information about single molecule dynamics of E. coli wild-type
key: localid value: Eco_MinE_AS
key: URL value: null
key: license value: CC BY-NC-SA
key: datatype value: single molecule dynamics
key: laboratory value: Laboratory for Biochemical Simulation
key: phone value: null
key: organization value: RIKEN
key: name value: Satya Nanda Vel Arjunan
key: method_summary value: See details in Arjunan et al. (2010) Syst Synth Biol 4, 35-53.
key: contributors value: Arjunan, S. N. V. and Tomita, M.
key: department value: Quantitative Biology Center
key: E_mail value: satya.arjunan@riken.jp
key: PMID value: 20012222
key: basedon value: Simulation
No. 2
key: address value: 6-2-3 Furuedai, Suita, Osaka 565-0874, Japan
key: dblink value: http://www.ncbi.nlm.nih.gov/pubmed/20012222
key: organism value: E. coli
key: citation value: null
key: description value: quantitative single molecule dynamics of Min proteins (MinEE, MinDEE, MinDEED, and MinD) in E. coli wild-type
key: title value: BDML file for quantitative information about single molecule dynamics of E. coli wild-type
key: localid value: Eco_MinE_AS
key: URL value: null
key: license value: CC BY-NC-SA
key: datatype value: single molecule dynamics
key: laboratory value: Laboratory for Biochemical Simulation
key: phone value: null
key: organization value: RIKEN
key: name value: Satya Nanda Vel Arjunan
key: method_summary value: See details in Arjunan et al. (2010) Syst Synth Biol 4, 35-53.
key: contributors value: Arjunan, S. N. V. and Tomita, M.
key: department value: Quantitative Biology Center
key: E_mail value: satya.arjunan@riken.jp
key: PMID value: 20012222
key: basedon value: Simulation
No. 3
key: address value: 1-3 Machikaneyama, Toyonaka, Osaka 560-0043, Japan
key: dblink value: null
key: organism value: H. sapiens
key: citation value: null
key: description value: quantitative information about red blood cells and platelets in Homo sapiens
key: title value: BDML file for quantitative information about red blood cells and platelets in human
key: localid value: Man_RBC_IS
key: URL value: null
key: license value: CC BY-NC-SA
key: datatype value: cell dynamics
key: laboratory value: Sugiyama Laboratory
key: phone value: null
key: organization value: Osaka University
key: name value: Kazuyasu Sugiyama
key: method_summary value: See details in Ii et al. (2012) J Biomech Sci Engrg 7(1):72-83 and Matsumoto et al. (2014) Procedia IUTAM 10:193-200
key: contributors value: Satoshi Ii, Kazuyasu Sugiyama, Shu Takagi, and Yoichiro Matsumoto
key: department value: Department of Mechanical Science and Bioengineering
key: E_mail value: kazuyasu.sugiyama@me.es.osaka-u.ac.jp
key: PMID value: null
key: basedon value: Simulation
No. 4
key: address value: 6-2-3 Furuedai, Suita, Osaka 565-0874, Japan
key: dblink value: http://www.ncbi.nlm.nih.gov/pubmed/25504902
key: organism value: D. discoideum
key: citation value: null
key: description value: quantitative information about single molecule dynamics in D. discoideum
key: title value: BDML file for quantitative information about single molecule dynamics of D. discoideum
key: localid value: Ddi_cAR1_JT
key: URL value: null
key: license value: CC BY-NC-SA
key: datatype value: single molecule dynamics
key: laboratory value: Laboratory for Nano-Bio Probes
key: phone value: null
key: organization value: RIKEN
key: name value: Takashi Jin
key: method_summary value: See details in Komatsuzaki et al. (2015) Small, 11(12):1396-1401
key: contributors value: Akihiro Komatsuzaki, Tatsuya Ohyanagi, Yoshikazu Tsukasaki, Yukihiro Miyanaga, Masahiro Ueda, Takashi Jin
key: department value: Quantitative Biology Center
key: E_mail value: tjin@riken.jp
key: PMID value: 25504902
key: basedon value: Measurement
No. 5
key: address value: 6-2-3 Furuedai, Suita, Osaka 565-0874, Japan
key: dblink value: http://www.ncbi.nlm.nih.gov/pubmed/26147508
key: organism value: D. discoideum
key: citation value: null
key: description value: time-lapse laser-scanning confocal microscopy (LSCM) images of PTEN molecules in D. discoideum cell obtained from in vivo experiments
key: title value: BDML file for time-lapse laser-scanning confocal microscopy (LSCM) images of PTEN molecules in D. discoideum cell obtained from in vivo experiments
key: localid value: Ddi_PTEN_LSCM_EXP
key: URL value: null
key: license value: CC BY
key: datatype value: single molecule dynamics
key: laboratory value: Laboratory for Biochemical Simulation
key: phone value: null
key: organization value: RIKEN
key: name value: Koichi Takahashi
key: method_summary value: See details in Watabe et al. (2015) PLoS One, 10(7): e0130089
key: contributors value: Masaki Watabe, Satya N. V. Arjunan, Seiya Fukushima, Kazunari Iwamoto, Jun Kozuka, Satomi Matsuoka, Yuki Shindo, Masahiro Ueda, Koichi Takahashi
key: department value: Quantitative Biology Center
key: E_mail value: ktakahashi@riken.jp
key: PMID value: 26147508
key: basedon value: Measurement
No. 6
key: address value: 6-2-3 Furuedai, Suita, Osaka 565-0874, Japan
key: dblink value: http://www.ncbi.nlm.nih.gov/pubmed/26147508
key: organism value: D. discoideum
key: citation value: null
key: description value: time-lapse images of the self-organizing wave model of PTEN observed using the laser-scanning confocal microscopy (LSCM) simulation module
key: title value: BDML file for time-lapse images of the self-organizing wave model of PTEN observed using the laser-scanning confocal microscopy (LSCM) simulation module
key: localid value: Ddi_PTEN_LSCM_SIM
key: URL value: null
key: license value: CC BY
key: datatype value: single molecule dynamics
key: laboratory value: Laboratory for Biochemical Simulation
key: phone value: null
key: organization value: RIKEN
key: name value: Koichi Takahashi
key: method_summary value: See details in Watabe et al. (2015) PLoS One, 10(7): e0130089
key: contributors value: Masaki Watabe, Satya N. V. Arjunan, Seiya Fukushima, Kazunari Iwamoto, Jun Kozuka, Satomi Matsuoka, Yuki Shindo, Masahiro Ueda, Koichi Takahashi
key: department value: Quantitative Biology Center
key: E_mail value: ktakahashi@riken.jp
key: PMID value: 26147508
key: basedon value: Simulation
No. 7
key: address value: 6-2-3 Furuedai, Suita, Osaka 565-0874, Japan
key: dblink value: http://www.ncbi.nlm.nih.gov/pubmed/26147508
key: organism value: R. norvegicus
key: citation value: null
key: description value: time-lapse laser-scanning confocal microscopy (LSCM) images of ERK molecules in PC-12 cell obtained from in vivo experiments
key: title value: BDML file for time-lapse laser-scanning confocal microscopy (LSCM) images of ERK molecules in PC-12 cell obtained from in vivo experiments
key: localid value: Rat_ERK_LSCM_EXP
key: URL value: null
key: license value: CC BY
key: datatype value: single molecule dynamics
key: laboratory value: Laboratory for Biochemical Simulation
key: phone value: null
key: organization value: RIKEN
key: name value: Koichi Takahashi
key: method_summary value: See details in Watabe et al. (2015) PLoS One, 10(7): e0130089
key: contributors value: Masaki Watabe, Satya N. V. Arjunan, Seiya Fukushima, Kazunari Iwamoto, Jun Kozuka, Satomi Matsuoka, Yuki Shindo, Masahiro Ueda, Koichi Takahashi
key: department value: Quantitative Biology Center
key: E_mail value: ktakahashi@riken.jp
key: PMID value: 26147508
key: basedon value: Measurement
No. 8
key: address value: 6-2-3 Furuedai, Suita, Osaka 565-0874, Japan
key: dblink value: http://www.ncbi.nlm.nih.gov/pubmed/26147508
key: organism value: R. norvegicus
key: citation value: null
key: description value: time-lapse images of the ERK nuclear translocation model using the laser-scanning confocal microscopy (LSCM) simulation module
key: title value: BDML file for time-lapse images of the ERK nuclear translocation model using the laser-scanning confocal microscopy (LSCM) simulation module
key: localid value: Rat_ERK_LSCM_SIM
key: URL value: null
key: license value: CC BY
key: datatype value: single molecule dynamics
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key: phone value: null
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key: name value: Koichi Takahashi
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key: department value: Quantitative Biology Center
key: E_mail value: ktakahashi@riken.jp
key: PMID value: 26147508
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Output from Server ....

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Output from Server ....

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