singularity_array/global_tool_registry.yaml at master · omegatro/singularity_array · GitHub

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### Description
# This file is used to capture state of external open-source dependencies,
# which are used in bioinformatics pipelines as singularity image files.
# For detailed use instructions see README.md file in this repository.

### Example
# tool_name: <my_tool_name>
# tool_version: <my_tool_version>
# tool_source: <e.g. a github repository>
# tool_hash: <SHA256> OR NULL
# tool_publication: NULL
# image_reference:
#   <docker://repository/name:version> OR
#   <conda_based> - created from conda definition file using inhouse-adopted procedure
# db_hash: <SHA256> OR NULL
# db_ref: <link_to_db_file(s)> OR NULL

# Description
# This file is used to capture the state of external open-source dependencies,
# which are used in bioinformatics pipelines as singularity image files.
# For detailed use instructions see README.md file in this repository.

tools:
- db_hash: null
  db_ref: null
  image_reference: conda_based
  tool_hash: aa4a6491e567e8762cb27cada375047c2f914ae14dd58dc67b1f11c16233d3b2
  tool_name: chewbbaca
  tool_publication: null
  tool_source: https://github.com/B-UMMI/chewBBACA
  tool_version: 3.3.10
- db_hash: null
  db_ref: null
  image_reference: conda_based
  tool_hash: d1cc5774ad7f3ed403b26b25e040dd32260dfb3d2ebda0e0bdffa1767e894f73
  tool_name: ectyper
  tool_publication: null
  tool_source: https://github.com/hulu/ectyper
  tool_version: 2.0.0
- db_hash: null
  db_ref: null
  image_reference: conda_based
  tool_hash: 237d774cc5f5b415a315bd46d760e8bcc45d2a1c24e6027141d5c3a89fe24688
  tool_name: fastp
  tool_publication: null
  tool_source: https://github.com/example/repo
  tool_version: 0.24.0
- db_hash: null
  db_ref: null
  image_reference: conda_based
  tool_hash: 06598f95a9b564e95ffd210d428ca6eb504708ba7441ef036a4912fb31c2cdad
  tool_name: hicap
  tool_publication: null
  tool_source: https://github.com/sahlenlab/HiCapTools
  tool_version: 1.0.4
- db_hash: null
  db_ref: null
  image_reference: conda_based
  tool_hash: 152970041f07896e623bcb57b3d5721f041a75c9c2bcab42299a430a2528faaf
  tool_name: kleborate
  tool_publication: null
  tool_source: https://github.com/klebgenomics/Kleborate
  tool_version: 3.1.2
- db_hash: null
  db_ref: null
  image_reference: conda_based
  tool_hash: 2f8e3a889ab14bf942bd59ad4ff1b68eda0383b2990e278f8d4d73c6c0b7e113
  tool_name: kraken2
  tool_publication: null
  tool_source: https://github.com/DerrickWood/kraken2
  tool_version: 2.1.3
- db_hash: null
  db_ref: null
  image_reference: conda_based
  tool_hash: f2628e9e9b73ed4cb4a636cbc8b878dc66d4cc5e9da1b4dc6d72c1cb698dd28d
  tool_name: mlst
  tool_publication: null
  tool_source: https://github.com/example/repo
  tool_version: 2.23.0
- db_hash: null
  db_ref: null
  image_reference: conda_based
  tool_hash: 7e643c697c37b928dcffdb3cd7c6d97612cbccaef2b986ff592db2667ca70901
  tool_name: mob
  tool_publication: null
  tool_source: https://github.com/remotemobprogramming/mob
  tool_version: 3.1.9
- db_hash: null
  db_ref: null
  image_reference: conda_based
  tool_hash: 682fd2f9b9591d6da0f15462ef5225989f2f06b4a248b495499cbcb0e6ee0dab
  tool_name: ncbi-amrfinderplus
  tool_publication: null
  tool_source: https://github.com/example/repo
  tool_version: 4.0.3
- db_hash: null
  db_ref: null
  image_reference: conda_based
  tool_hash: d7b969192ba4284156cadc38ff0dc651bf437471dc26171c33d85ca702c92993
  tool_name: quast
  tool_publication: null
  tool_source: https://github.com/ablab/quast
  tool_version: 5.3.0
- db_hash: null
  db_ref: null
  image_reference: conda_based
  tool_hash: 2adf2b5d76448280f6abc2ac3e2dcb2cb4f60e6335f5dbc19f4a0a605c7138bb
  tool_name: resfinder
  tool_publication: null
  tool_source: https://github.com/cadms/resfinder
  tool_version: 4.6.0
- db_hash: null
  db_ref: null
  image_reference: conda_based
  tool_hash: 6c1c1d0608f77d35626e8db2c05594e169e6e16d49f7e4dcb8855f28c0380002
  tool_name: seqsero2
  tool_publication: null
  tool_source: https://github.com/denglab/SeqSero2
  tool_version: 1.3.1
- db_hash: null
  db_ref: null
  image_reference: conda_based
  tool_hash: df0bb0e4f56f6fa2b01d3d1f166c4e230f3717457ab0de04579551edfcd2e440
  tool_name: sistr
  tool_publication: null
  tool_source: https://github.com/example/repo
  tool_version: 1.1.3
- db_hash: null
  db_ref: null
  image_reference: conda_based
  tool_hash: 136a0e591fc25f424ba151d57fa19b29ea3acb74a0fcd28b081f94bb277132c7
  tool_name: stecfinder
  tool_publication: null
  tool_source: https://github.com/LanLab/STECFinder
  tool_version: 1.1.2
- db_hash: null
  db_ref: null
  image_reference: conda_based
  tool_hash: a68990e3c5945258e7aab3cea531e3cc9b2df66e205fff83d85df3967f273beb
  tool_name: virulencefinder
  tool_publication: null
  tool_source: https://github.com/example/repo
  tool_version: '2.0'