From fc547406470f8f7316fbd295470725545780f2d5 Mon Sep 17 00:00:00 2001 From: Ayelet Peres Date: Tue, 7 Dec 2021 20:03:06 +0200 Subject: [PATCH] Update README.md --- pipeline/README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pipeline/README.md b/pipeline/README.md index 4cf4739..a99ddd9 100644 --- a/pipeline/README.md +++ b/pipeline/README.md @@ -5,7 +5,7 @@ 2. makeblastdb tool 3. MakeDb tool 4. R and the following R packages: seqinr, tigger, optparse, gtools, ggplot2, stringr, dplyr, data.table, alakazam, and reshape2 -5. The fasta file refernces of the 3 segments: TRBV, TRBD, and TRBJ in IMGT format (gapped sequences). (the references can be found in the "Script_references" folder) +5. The fasta file refernces of the 3 segments: TRBV, TRBD, and TRBJ in IMGT format (gapped sequences). (the references can be found in the "fasta_references" folder) 6. Blast databases for germline TRBV, TRBD, and TRBJ sequences as describde over IgBlast set up: https://ncbi.github.io/igblast/cook/How-to-set-up.html (the references can be found in the "makeblastdb_references" folder) ## Initialize