Description of the bug
Invalid config file include artifact in the code causes failure with the strict syntax with v26.
Command used and terminal output
$ nextflow run nf-core/methylseq -revision master -latest -resume -profile docker,test --outdir results -work-dir work --aligner bismark
N E X T F L O W ~ version 26.04.0
Pulling nf-core/methylseq:master ...
downloaded from https://github.com/nf-core/methylseq.git
Error nextflow.config:251:23: Invalid include source: '/home/.nextflow/assets/.repos/nf-core/methylseq/clones/5aa56467a85a5e2d6795ea72dfa5a5f0c9babc23/conf/aws/batch/nextflow.config'
│ 251 | aws_batch { includeConfig 'conf/aws/batch/nextflow.config' }
╰ | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ERROR ~ Config parsing failed
-- Check '.nextflow.log' file for details
Relevant files
No response
System information
Version: 26.04.0 build 12031
Created: 29-04-2026 04:00 UTC (12:00 SGST)
System: Linux 5.15.0-177-generic
Runtime: Groovy 4.0.31 on OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src
Encoding: UTF-8 (UTF-8)
Description of the bug
Invalid config file include artifact in the code causes failure with the strict syntax with v26.
Command used and terminal output
Relevant files
No response
System information
Version: 26.04.0 build 12031
Created: 29-04-2026 04:00 UTC (12:00 SGST)
System: Linux 5.15.0-177-generic
Runtime: Groovy 4.0.31 on OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src
Encoding: UTF-8 (UTF-8)