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Missing aws batch config file #607

@bounlu

Description

@bounlu

Description of the bug

Invalid config file include artifact in the code causes failure with the strict syntax with v26.

Command used and terminal output

$ nextflow run nf-core/methylseq -revision master -latest -resume -profile docker,test --outdir results -work-dir work --aligner bismark

 N E X T F L O W   ~  version 26.04.0

Pulling nf-core/methylseq:master ...
 downloaded from https://github.com/nf-core/methylseq.git
Error nextflow.config:251:23: Invalid include source: '/home/.nextflow/assets/.repos/nf-core/methylseq/clones/5aa56467a85a5e2d6795ea72dfa5a5f0c9babc23/conf/aws/batch/nextflow.config'
│ 251 |     aws_batch       { includeConfig 'conf/aws/batch/nextflow.config' }
╰     |                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^


ERROR ~ Config parsing failed

 -- Check '.nextflow.log' file for details

Relevant files

No response

System information

Version: 26.04.0 build 12031
Created: 29-04-2026 04:00 UTC (12:00 SGST)
System: Linux 5.15.0-177-generic
Runtime: Groovy 4.0.31 on OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src
Encoding: UTF-8 (UTF-8)

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