From f7d57dd1e56d65a85cf9b6754dbfd8ba351a4cbb Mon Sep 17 00:00:00 2001 From: Ivan Aksamentov Date: Fri, 6 Mar 2026 19:00:05 +0100 Subject: [PATCH] fix(nextclade): align dataset metadata and qc config with schema --- nextclade/defaults/genome/pathogen.json | 12 ++++-------- nextclade/defaults/sh/pathogen.json | 6 ++---- 2 files changed, 6 insertions(+), 12 deletions(-) diff --git a/nextclade/defaults/genome/pathogen.json b/nextclade/defaults/genome/pathogen.json index 62f3018..1bbe83b 100644 --- a/nextclade/defaults/genome/pathogen.json +++ b/nextclade/defaults/genome/pathogen.json @@ -20,15 +20,13 @@ "attributes": { "name": "Mumps MuV Genotypes (Full genome)", "reference name": "Jeryl-Lynn (genotype A)", - "reference accession": "D90232" + "reference accession": "D90232", + "experimental": true }, "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" }, - "deprecated": false, - "enabled": true, - "experimental": true, "files": { "changelog": "CHANGELOG.md", "examples": "sequences.fasta", @@ -54,13 +52,11 @@ "missingData": { "enabled": true, "missingDataThreshold": 2000, - "scoreBias": 500, - "scoreWeight": 50 + "scoreBias": 500 }, "mixedSites": { "enabled": true, - "mixedSitesThreshold": 15, - "scoreWeight": 50 + "mixedSitesThreshold": 15 }, "frameShifts": { "enabled": true, diff --git a/nextclade/defaults/sh/pathogen.json b/nextclade/defaults/sh/pathogen.json index f93d387..fb2f5bb 100644 --- a/nextclade/defaults/sh/pathogen.json +++ b/nextclade/defaults/sh/pathogen.json @@ -20,15 +20,13 @@ "attributes": { "name": "Mumps MuV Genotypes (SH gene 315nt region)", "reference name": "Jeryl-Lynn (genotype A)", - "reference accession": "D90232" + "reference accession": "D90232", + "experimental": true }, "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" }, - "deprecated": false, - "enabled": true, - "experimental": true, "files": { "changelog": "CHANGELOG.md", "examples": "sequences.fasta",