Right now compare_contigs.py compares contigs based on domain content, it would be nice to also have some sequence-comparison based metrics. Such as, nucleotide or protein kmer jaccard or adjacency index, or local or global alignment methods, for example the Domain Sequence Similarity metric (https://www.biorxiv.org/content/10.1101/445270v1)
Right now
compare_contigs.pycompares contigs based on domain content, it would be nice to also have some sequence-comparison based metrics. Such as, nucleotide or protein kmer jaccard or adjacency index, or local or global alignment methods, for example the Domain Sequence Similarity metric (https://www.biorxiv.org/content/10.1101/445270v1)