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Merge pull request #237 from ncsa/feature/karen_bacterial_wrapper
NEAT Unit and Integration Tests
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Feature/karen bacterial wrapper
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Solving VCF-related issues.
NEAT Unit and Integration Tests
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Fixing post-dash characters.
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More padding.
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Table 1 Markdown rendering.
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Merge pull request #263 from ncsa/feature/claude-assisted-tests
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Merge pull request #262 from ncsa/fix/generate-variants-probability-r…
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Reduced word count.
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Feature/karen bacterial wrapper
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Merge pull request #261 from ncsa/fix/vcf-wp-genotype-condition
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Merge pull request #260 from ncsa/fix/contig-variants-remove-variant
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Merge pull request #264 from ncsa/fix/generate-reads-contig-shorter-t…
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Fix infinite loop when contig is shorter than read_len
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Fix probability_rates mismatch with local_mut_regions in generate_var…
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