From ee4637e5f2ce678421768064f6aead0bcae758b1 Mon Sep 17 00:00:00 2001
From: Till Hartmann <till.hartmann@udo.edu>
Date: Tue, 26 May 2020 14:26:40 +0200
Subject: [PATCH] add dinopy version of fqcnt

---
 fqcnt/fqcnt_py9x_dinopy.py | 15 +++++++++++++++
 1 file changed, 15 insertions(+)
 create mode 100755 fqcnt/fqcnt_py9x_dinopy.py

diff --git a/fqcnt/fqcnt_py9x_dinopy.py b/fqcnt/fqcnt_py9x_dinopy.py
new file mode 100755
index 0000000..9932c31
--- /dev/null
+++ b/fqcnt/fqcnt_py9x_dinopy.py
@@ -0,0 +1,15 @@
+#!/usr/bin/env python
+import sys
+import dinopy
+
+if __name__ == "__main__":
+    if len(sys.argv) != 2:
+        print("Usage: {} <in.fq[.gz]>".format(sys.argv[0]))
+        sys.exit(0)
+    fqr = dinopy.FastqReader(sys.argv[1])
+    n, sl, ql = 0, 0, 0
+    for (seq, _, qual) in fqr.reads(quality_values=True):
+        n += 1
+        sl += len(seq)
+        ql += len(qual)
+    print("{}\t{}\t{}".format(n, sl, ql))