From add401f2e92312429e0d808b8965875ae8cd82c5 Mon Sep 17 00:00:00 2001 From: Kyle Barron Date: Mon, 15 Jun 2026 12:27:32 -0400 Subject: [PATCH 1/4] chore: Bump pyo3 to 0.29 --- Cargo.lock | 177 ++++++----------------------------------------------- Cargo.toml | 13 ++-- 2 files changed, 25 insertions(+), 165 deletions(-) diff --git a/Cargo.lock b/Cargo.lock index 03b1aa7..f5de93a 100644 --- a/Cargo.lock +++ b/Cargo.lock @@ -362,49 +362,12 @@ version = "3.20.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "5d20789868f4b01b2f2caec9f5c4e0213b41e3e5702a50157d699ae31ced2fcb" -[[package]] -name = "bytecount" -version = "0.6.9" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "175812e0be2bccb6abe50bb8d566126198344f707e304f45c648fd8f2cc0365e" - [[package]] name = "bytes" version = "1.11.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "1e748733b7cbc798e1434b6ac524f0c1ff2ab456fe201501e6497c8417a4fc33" -[[package]] -name = "camino" -version = "1.2.2" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e629a66d692cb9ff1a1c664e41771b3dcaf961985a9774c0eb0bd1b51cf60a48" -dependencies = [ - "serde_core", -] - -[[package]] -name = "cargo-platform" -version = "0.1.9" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e35af189006b9c0f00a064685c727031e3ed2d8020f7ba284d78cc2671bd36ea" -dependencies = [ - "serde", -] - -[[package]] -name = "cargo_metadata" -version = "0.14.2" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4acbb09d9ee8e23699b9634375c72795d095bf268439da88562cf9b501f181fa" -dependencies = [ - "camino", - "cargo-platform", - "semver", - "serde", - "serde_json", -] - [[package]] name = "cc" version = "1.2.56" @@ -589,31 +552,6 @@ version = "1.0.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "877a4ace8713b0bcf2a4e7eec82529c029f1d0619886d18145fea96c3ffe5c0f" -[[package]] -name = "errno" -version = "0.3.14" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "39cab71617ae0d63f51a36d69f866391735b51691dbda63cf6f96d042b63efeb" -dependencies = [ - "libc", - "windows-sys 0.61.2", -] - -[[package]] -name = "error-chain" -version = "0.12.4" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2d2f06b9cac1506ece98fe3231e3cc9c4410ec3d5b1f24ae1c8946f0742cdefc" -dependencies = [ - "version_check", -] - -[[package]] -name = "fastrand" -version = "2.3.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "37909eebbb50d72f9059c3b6d82c0463f2ff062c9e95845c43a6c9c0355411be" - [[package]] name = "find-msvc-tools" version = "0.1.9" @@ -800,12 +738,6 @@ dependencies = [ "wasip3", ] -[[package]] -name = "glob" -version = "0.3.3" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0cc23270f6e1808e30a928bdc84dea0b9b4136a8bc82338574f23baf47bbd280" - [[package]] name = "h2" version = "0.4.13" @@ -1241,12 +1173,6 @@ version = "0.2.16" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "b6d2cec3eae94f9f509c767b45932f1ada8350c4bdb85af2fcab4a3c14807981" -[[package]] -name = "linux-raw-sys" -version = "0.12.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "32a66949e030da00e8c7d4434b251670a91556f4144941d37452769c25d58a53" - [[package]] name = "litemap" version = "0.8.1" @@ -1385,9 +1311,9 @@ dependencies = [ [[package]] name = "numpy" -version = "0.28.0" +version = "0.29.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "778da78c64ddc928ebf5ad9df5edf0789410ff3bdbf3619aed51cd789a6af1e2" +checksum = "6a5b15d63a5ff39e378daed0e1340d3a5964703ea9712eb09a0dc66fade996f4" dependencies = [ "half", "libc", @@ -1610,22 +1536,11 @@ dependencies = [ "unicode-ident", ] -[[package]] -name = "pulldown-cmark" -version = "0.9.6" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "57206b407293d2bcd3af849ce869d52068623f19e1b5ff8e8778e3309439682b" -dependencies = [ - "bitflags", - "memchr", - "unicase", -] - [[package]] name = "pyo3" -version = "0.28.2" +version = "0.29.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "cf85e27e86080aafd5a22eae58a162e133a589551542b3e5cee4beb27e54f8e1" +checksum = "cd274650b21d4bfc26a0a47587962c1edb425f69287324355cd040c3ea66071c" dependencies = [ "chrono", "chrono-tz", @@ -1640,8 +1555,7 @@ dependencies = [ [[package]] name = "pyo3-arrow" -version = "0.18.0" -source = "git+https://github.com/kylebarron/arro3?rev=7cfe579bab03406bf5d3e4824e171bf7204b43cc#7cfe579bab03406bf5d3e4824e171bf7204b43cc" +version = "0.19.0" dependencies = [ "arrow-array", "arrow-buffer", @@ -1660,9 +1574,9 @@ dependencies = [ [[package]] name = "pyo3-async-runtimes" -version = "0.28.0" +version = "0.29.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9e7364a95bf00e8377bbf9b0f09d7ff9715a29d8fcf93b47d1a967363b973178" +checksum = "b3ef68daa7316a3fac65e5e18b2203f010346de1c1c53456811a2624673ab046" dependencies = [ "futures-channel", "futures-util", @@ -1674,18 +1588,18 @@ dependencies = [ [[package]] name = "pyo3-build-config" -version = "0.28.2" +version = "0.29.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8bf94ee265674bf76c09fa430b0e99c26e319c945d96ca0d5a8215f31bf81cf7" +checksum = "c5e2a7d2f0d013342f295c048ad19237add5154a55b1c5a254c0ec93d4109078" dependencies = [ "target-lexicon", ] [[package]] name = "pyo3-ffi" -version = "0.28.2" +version = "0.29.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "491aa5fc66d8059dd44a75f4580a2962c1862a1c2945359db36f6c2818b748dc" +checksum = "ca85c467da1bbc8d866eea5deff9cf29ea5f7785054a17da36e65bda9c05845b" dependencies = [ "libc", "pyo3-build-config", @@ -1693,18 +1607,17 @@ dependencies = [ [[package]] name = "pyo3-file" -version = "0.15.0" -source = "git+https://github.com/kylebarron/pyo3-file?rev=f724ceaa7e06e7d227bf40b1d60adbb842963a44#f724ceaa7e06e7d227bf40b1d60adbb842963a44" +version = "0.16.0" +source = "git+https://github.com/kylebarron/pyo3-file?rev=e88695f375ea3db95d96efc53707f4e8eb1def00#e88695f375ea3db95d96efc53707f4e8eb1def00" dependencies = [ "pyo3", - "skeptic", ] [[package]] name = "pyo3-macros" -version = "0.28.2" +version = "0.29.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f5d671734e9d7a43449f8480f8b38115df67bef8d21f76837fa75ee7aaa5e52e" +checksum = "9ac53762fd065daa3194dd09337a38bd793a188100fd1a9304c4ab312d901771" dependencies = [ "proc-macro2", "pyo3-macros-backend", @@ -1714,22 +1627,21 @@ dependencies = [ [[package]] name = "pyo3-macros-backend" -version = "0.28.2" +version = "0.29.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "22faaa1ce6c430a1f71658760497291065e6450d7b5dc2bcf254d49f66ee700a" +checksum = "4ca3a1557399783172dc5bf39cfca835157732532cba56b71d2292161e53b362" dependencies = [ "heck", "proc-macro2", - "pyo3-build-config", "quote", "syn", ] [[package]] name = "pyo3-object_store" -version = "0.9.0" +version = "0.11.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b3056dc8a77db5d44d32e7f740db0b01e5b65a43d181487a6917576959c6eb9a" +checksum = "13aaa9b876f9b02773cc18fd03dd359bddf3ca21978068024511f166c9c0c6a5" dependencies = [ "async-trait", "bytes", @@ -1989,19 +1901,6 @@ dependencies = [ "semver", ] -[[package]] -name = "rustix" -version = "1.1.4" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b6fe4565b9518b83ef4f91bb47ce29620ca828bd32cb7e408f0062e9930ba190" -dependencies = [ - "bitflags", - "errno", - "libc", - "linux-raw-sys", - "windows-sys 0.61.2", -] - [[package]] name = "rustls" version = "0.23.37" @@ -2113,10 +2012,6 @@ name = "semver" version = "1.0.27" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "d767eb0aabc880b29956c35734170f26ed551a859dbd361d140cdbeca61ab1e2" -dependencies = [ - "serde", - "serde_core", -] [[package]] name = "seq-macro" @@ -2203,21 +2098,6 @@ version = "1.0.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "b2aa850e253778c88a04c3d7323b043aeda9d3e30d5971937c1855769763678e" -[[package]] -name = "skeptic" -version = "0.13.7" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "16d23b015676c90a0f01c197bfdc786c20342c73a0afdda9025adb0bc42940a8" -dependencies = [ - "bytecount", - "cargo_metadata", - "error-chain", - "glob", - "pulldown-cmark", - "tempfile", - "walkdir", -] - [[package]] name = "slab" version = "0.4.12" @@ -2295,19 +2175,6 @@ version = "0.13.5" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "adb6935a6f5c20170eeceb1a3835a49e12e19d792f6dd344ccc76a985ca5a6ca" -[[package]] -name = "tempfile" -version = "3.26.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "82a72c767771b47409d2345987fda8628641887d5466101319899796367354a0" -dependencies = [ - "fastrand", - "getrandom 0.4.1", - "once_cell", - "rustix", - "windows-sys 0.61.2", -] - [[package]] name = "thiserror" version = "1.0.69" @@ -2525,12 +2392,6 @@ version = "1.19.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "562d481066bde0658276a35467c4af00bdc6ee726305698a55b86e61d7ad82bb" -[[package]] -name = "unicase" -version = "2.9.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "dbc4bc3a9f746d862c45cb89d705aa10f187bb96c76001afab07a0d35ce60142" - [[package]] name = "unicode-ident" version = "1.0.24" diff --git a/Cargo.toml b/Cargo.toml index c4d2e10..c510de7 100644 --- a/Cargo.toml +++ b/Cargo.toml @@ -32,15 +32,14 @@ arrow-select = "59" bytes = "1.7.0" half = "2" indexmap = "2.11" -numpy = "0.28" +numpy = "0.29" object_store = "0.13" parquet = "59" -pyo3 = { version = "0.28", features = ["macros", "indexmap"] } -# pyo3-arrow = { path = "pyo3-arrow" } -pyo3-arrow = { git = "https://github.com/kylebarron/arro3", rev = "7cfe579bab03406bf5d3e4824e171bf7204b43cc" } -pyo3-async-runtimes = { version = "0.28", features = ["tokio-runtime"] } -pyo3-file = { git = "https://github.com/kylebarron/pyo3-file", rev = "f724ceaa7e06e7d227bf40b1d60adbb842963a44" } -pyo3-object_store = "0.9" +pyo3 = { version = "0.29", features = ["macros", "indexmap"] } +pyo3-arrow = { path = "pyo3-arrow" } +pyo3-async-runtimes = { version = "0.29", features = ["tokio-runtime"] } +pyo3-file = { git = "https://github.com/kylebarron/pyo3-file", rev = "e88695f375ea3db95d96efc53707f4e8eb1def00" } +pyo3-object_store = "0.11" thiserror = "1.0.63" [profile.release] From 59de43f2ece9a5219d5e62b78c85fba08c3f5ece Mon Sep 17 00:00:00 2001 From: Kyle Barron Date: Mon, 15 Jun 2026 12:40:29 -0400 Subject: [PATCH 2/4] switch 3.13t to 3.14t --- .github/workflows/test-python.yml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/test-python.yml b/.github/workflows/test-python.yml index 9fad4bf..ee09dfa 100644 --- a/.github/workflows/test-python.yml +++ b/.github/workflows/test-python.yml @@ -38,7 +38,7 @@ jobs: strategy: fail-fast: true matrix: - python-version: ["3.9", "3.12", "3.13", "3.13t"] + python-version: ["3.9", "3.12", "3.13", "3.14", "3.14t"] steps: - uses: actions/checkout@v4 @@ -65,12 +65,12 @@ jobs: uv run --python ${{ matrix.python-version }} maturin dev -m arro3-io/Cargo.toml - name: Run python tests - if: matrix.python-version != '3.13t' + if: matrix.python-version != '3.14t' run: | uv run --python ${{ matrix.python-version }} pytest tests - name: Run python tests with --require-gil-disabled - if: matrix.python-version == '3.13t' + if: matrix.python-version == '3.14t' run: | uv run --python ${{ matrix.python-version }} pytest tests --require-gil-disabled From 1174304db4177cf1aaa2745af65bd855143c3ea0 Mon Sep 17 00:00:00 2001 From: Kyle Barron Date: Mon, 15 Jun 2026 12:40:46 -0400 Subject: [PATCH 3/4] fmt --- .github/workflows/test-python.yml | 120 +++++++++++++++--------------- 1 file changed, 60 insertions(+), 60 deletions(-) diff --git a/.github/workflows/test-python.yml b/.github/workflows/test-python.yml index ee09dfa..7421b7c 100644 --- a/.github/workflows/test-python.yml +++ b/.github/workflows/test-python.yml @@ -1,79 +1,79 @@ name: Python on: - push: - branches: - - main - pull_request: + push: + branches: + - main + pull_request: concurrency: - group: ${{ github.workflow }}-${{ github.ref }} - cancel-in-progress: true + group: ${{ github.workflow }}-${{ github.ref }} + cancel-in-progress: true jobs: - pre-commit: - name: Run pre-commit on Python code - runs-on: ubuntu-latest - steps: - - uses: actions/checkout@v4 + pre-commit: + name: Run pre-commit on Python code + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v4 - - uses: actions/setup-python@v5 - with: - python-version: "3.11" + - uses: actions/setup-python@v5 + with: + python-version: "3.11" - - name: Cache pre-commit virtualenvs - uses: actions/cache@v4 - with: - path: ~/.cache/pre-commit - key: pre-commit-3|${{ hashFiles('.pre-commit-config.yaml') }} + - name: Cache pre-commit virtualenvs + uses: actions/cache@v4 + with: + path: ~/.cache/pre-commit + key: pre-commit-3|${{ hashFiles('.pre-commit-config.yaml') }} - - name: run pre-commit - run: | - python -m pip install pre-commit - pre-commit run --all-files + - name: run pre-commit + run: | + python -m pip install pre-commit + pre-commit run --all-files - test-python: - name: Build and test Python - runs-on: ubuntu-latest - strategy: - fail-fast: true - matrix: - python-version: ["3.9", "3.12", "3.13", "3.14", "3.14t"] - steps: - - uses: actions/checkout@v4 + test-python: + name: Build and test Python + runs-on: ubuntu-latest + strategy: + fail-fast: true + matrix: + python-version: ["3.9", "3.12", "3.13", "3.14", "3.14t"] + steps: + - uses: actions/checkout@v4 - - name: Install Rust - uses: dtolnay/rust-toolchain@stable + - name: Install Rust + uses: dtolnay/rust-toolchain@stable - - uses: Swatinem/rust-cache@v2 + - uses: Swatinem/rust-cache@v2 - - name: Install a specific version of uv - uses: astral-sh/setup-uv@v7 - with: - enable-cache: true - version: "0.8.x" + - name: Install a specific version of uv + uses: astral-sh/setup-uv@v7 + with: + enable-cache: true + version: "0.8.x" - - name: Set up Python with uv - run: | - uv python install ${{ matrix.python-version }} + - name: Set up Python with uv + run: | + uv python install ${{ matrix.python-version }} - - name: Build rust submodules - run: | - # Note: core module must be first, because it's depended on by others - uv run --python ${{ matrix.python-version }} maturin dev -m arro3-core/Cargo.toml - uv run --python ${{ matrix.python-version }} maturin dev -m arro3-compute/Cargo.toml - uv run --python ${{ matrix.python-version }} maturin dev -m arro3-io/Cargo.toml + - name: Build rust submodules + run: | + # Note: core module must be first, because it's depended on by others + uv run --python ${{ matrix.python-version }} maturin dev -m arro3-core/Cargo.toml + uv run --python ${{ matrix.python-version }} maturin dev -m arro3-compute/Cargo.toml + uv run --python ${{ matrix.python-version }} maturin dev -m arro3-io/Cargo.toml - - name: Run python tests - if: matrix.python-version != '3.14t' - run: | - uv run --python ${{ matrix.python-version }} pytest tests + - name: Run python tests + if: matrix.python-version != '3.14t' + run: | + uv run --python ${{ matrix.python-version }} pytest tests - - name: Run python tests with --require-gil-disabled - if: matrix.python-version == '3.14t' - run: | - uv run --python ${{ matrix.python-version }} pytest tests --require-gil-disabled + - name: Run python tests with --require-gil-disabled + if: matrix.python-version == '3.14t' + run: | + uv run --python ${{ matrix.python-version }} pytest tests --require-gil-disabled - # Ensure docs build without warnings - - name: Check docs - run: uv run --group docs mkdocs build --strict + # Ensure docs build without warnings + - name: Check docs + run: uv run --group docs mkdocs build --strict From c3bbbeff5a205e6c57698f6c75226b5a203ea601 Mon Sep 17 00:00:00 2001 From: Kyle Barron Date: Mon, 15 Jun 2026 12:51:15 -0400 Subject: [PATCH 4/4] Bump uv lockfile --- uv.lock | 2966 +++++++++++++++++++++++++++++++++++++++++-------------- 1 file changed, 2226 insertions(+), 740 deletions(-) diff --git a/uv.lock b/uv.lock index 447600d..9b012d3 100644 --- a/uv.lock +++ b/uv.lock @@ -2,9 +2,18 @@ version = 1 revision = 3 requires-python = ">=3.9" resolution-markers = [ - "python_full_version >= '3.13'", - "python_full_version == '3.12.*'", - "python_full_version == '3.11.*'", + "python_full_version >= '3.14' and sys_platform == 'win32'", + "python_full_version >= '3.14' and sys_platform == 'emscripten'", + "python_full_version >= '3.14' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version == '3.13.*' and sys_platform == 'win32'", + "python_full_version == '3.13.*' and sys_platform == 'emscripten'", + "python_full_version == '3.13.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version == '3.12.*' and sys_platform == 'win32'", + "python_full_version == '3.12.*' and sys_platform == 'emscripten'", + "python_full_version == '3.12.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version == '3.11.*' and sys_platform == 'win32'", + "python_full_version == '3.11.*' and sys_platform == 'emscripten'", + "python_full_version == '3.11.*' and sys_platform != 'emscripten' and sys_platform != 'win32'", "python_full_version == '3.10.*'", "python_full_version < '3.10'", ] @@ -29,11 +38,11 @@ wheels = [ [[package]] name = "asttokens" -version = "3.0.0" +version = "3.0.1" source = { registry = 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