From 8e030ba1c1624001c6e2800465dc77a888f10360 Mon Sep 17 00:00:00 2001 From: Nicholas Roberts Date: Thu, 12 Dec 2024 18:36:11 +1100 Subject: [PATCH 01/25] Opt-in to gil_used = false, pin to rust-numpy git dep (for now) --- Cargo.lock | 17 +++++++++++------ Cargo.toml | 3 ++- arro3-compute/src/lib.rs | 2 +- arro3-core/src/lib.rs | 2 +- arro3-io/src/lib.rs | 2 +- pyo3-arrow/Cargo.lock | 9 ++++----- pyo3-arrow/Cargo.toml | 3 ++- 7 files changed, 22 insertions(+), 16 deletions(-) diff --git a/Cargo.lock b/Cargo.lock index d11c0982..595900fb 100644 --- a/Cargo.lock +++ b/Cargo.lock @@ -1342,9 +1342,8 @@ dependencies = [ [[package]] name = "numpy" -version = "0.23.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b94caae805f998a07d33af06e6a3891e38556051b8045c615470a71590e13e78" +version = "0.23.0-dev" +source = "git+https://github.com/davidhewitt/rust-numpy.git?branch=free-threading#2b364d319059923f0d94cc705f35e77680c55ccb" dependencies = [ "half", "libc", @@ -1353,7 +1352,7 @@ dependencies = [ "num-integer", "num-traits", "pyo3", - "rustc-hash", + "rustc-hash 1.1.0", ] [[package]] @@ -1733,7 +1732,7 @@ dependencies = [ "pin-project-lite", "quinn-proto", "quinn-udp", - "rustc-hash", + "rustc-hash 2.0.0", "rustls", "socket2", "thiserror", @@ -1750,7 +1749,7 @@ dependencies = [ "bytes", "rand", "ring", - "rustc-hash", + "rustc-hash 2.0.0", "rustls", "slab", "thiserror", @@ -1920,6 +1919,12 @@ version = "0.1.24" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "719b953e2095829ee67db738b3bfa9fa368c94900df327b3f07fe6e794d2fe1f" +[[package]] +name = "rustc-hash" +version = "1.1.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "08d43f7aa6b08d49f382cde6a7982047c3426db949b1424bc4b7ec9ae12c6ce2" + [[package]] name = "rustc-hash" version = "2.0.0" diff --git a/Cargo.toml b/Cargo.toml index 203034f4..75f72807 100644 --- a/Cargo.toml +++ b/Cargo.toml @@ -31,7 +31,8 @@ arrow-select = "53" bytes = "1.7.0" half = "2" indexmap = "2" -numpy = "0.23" +# numpy = "0.23" +numpy = { git = "https://github.com/davidhewitt/rust-numpy.git", branch = "free-threading" } object_store = "0.11" parquet = "53" pyo3 = { version = "0.23", features = ["macros", "indexmap"] } diff --git a/arro3-compute/src/lib.rs b/arro3-compute/src/lib.rs index 5c688568..af964af2 100644 --- a/arro3-compute/src/lib.rs +++ b/arro3-compute/src/lib.rs @@ -36,7 +36,7 @@ fn check_debug_build(py: Python) -> PyResult<()> { Ok(()) } -#[pymodule] +#[pymodule(gil_used = false)] fn _compute(py: Python, m: &Bound) -> PyResult<()> { check_debug_build(py)?; diff --git a/arro3-core/src/lib.rs b/arro3-core/src/lib.rs index 946523a1..e69d423c 100644 --- a/arro3-core/src/lib.rs +++ b/arro3-core/src/lib.rs @@ -30,7 +30,7 @@ fn check_debug_build(py: Python) -> PyResult<()> { } /// A Python module implemented in Rust. -#[pymodule] +#[pymodule(gil_used = false)] fn _core(py: Python, m: &Bound) -> PyResult<()> { check_debug_build(py)?; diff --git a/arro3-io/src/lib.rs b/arro3-io/src/lib.rs index 1f0dc3b0..cc6b0f80 100644 --- a/arro3-io/src/lib.rs +++ b/arro3-io/src/lib.rs @@ -33,7 +33,7 @@ fn check_debug_build(py: Python) -> PyResult<()> { Ok(()) } -#[pymodule] +#[pymodule(gil_used = false)] fn _io(py: Python, m: &Bound) -> PyResult<()> { check_debug_build(py)?; diff --git a/pyo3-arrow/Cargo.lock b/pyo3-arrow/Cargo.lock index b3ba3d0c..17f85e5e 100644 --- a/pyo3-arrow/Cargo.lock +++ b/pyo3-arrow/Cargo.lock @@ -707,9 +707,8 @@ dependencies = [ [[package]] name = "numpy" -version = "0.23.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b94caae805f998a07d33af06e6a3891e38556051b8045c615470a71590e13e78" +version = "0.23.0-dev" +source = "git+https://github.com/davidhewitt/rust-numpy.git?branch=free-threading#2b364d319059923f0d94cc705f35e77680c55ccb" dependencies = [ "half", "libc", @@ -931,9 +930,9 @@ checksum = "adad44e29e4c806119491a7f06f03de4d1af22c3a680dd47f1e6e179439d1f56" [[package]] name = "rustc-hash" -version = "2.0.0" +version = "1.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "583034fd73374156e66797ed8e5b0d5690409c9226b22d87cb7f19821c05d152" +checksum = "08d43f7aa6b08d49f382cde6a7982047c3426db949b1424bc4b7ec9ae12c6ce2" [[package]] name = "rustc_version" diff --git a/pyo3-arrow/Cargo.toml b/pyo3-arrow/Cargo.toml index 1d111b04..33139586 100644 --- a/pyo3-arrow/Cargo.toml +++ b/pyo3-arrow/Cargo.toml @@ -26,7 +26,8 @@ arrow = { version = "53", features = ["ffi", "chrono-tz"] } pyo3 = { version = "0.23", features = ["chrono", "indexmap"] } half = "2" indexmap = "2" -numpy = { version = "0.23", features = ["half"] } +# numpy = { version = "0.23", features = ["half"] } +numpy = { git = "https://github.com/davidhewitt/rust-numpy.git", branch = "free-threading", features = ["half"] } thiserror = "1" [dev-dependencies] From 13f5bc28f277aee457917be35a27c494e8846fb5 Mon Sep 17 00:00:00 2001 From: Nicholas Roberts Date: Thu, 12 Dec 2024 18:40:11 +1100 Subject: [PATCH 02/25] Add 3.13t to all builds --- .github/workflows/wheels.yml | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/.github/workflows/wheels.yml b/.github/workflows/wheels.yml index 84a41d1d..0c4f235e 100644 --- a/.github/workflows/wheels.yml +++ b/.github/workflows/wheels.yml @@ -51,7 +51,7 @@ jobs: version: "0.4.x" - name: Install Python versions - run: uv python install 3.9 3.10 3.11 3.12 3.13 pypy3.10 + run: uv python install 3.9 3.10 3.11 3.12 3.13 pypy3.10 3.13t - name: Build wheels uses: PyO3/maturin-action@v1 @@ -59,7 +59,7 @@ jobs: target: ${{ matrix.platform.target }} # As of Nov 2024, it was necessary to manually specify -i 3.13 to get # maturin to find the executable. --find-interpreter did not find it. - args: --release --out dist -i 3.9 -i 3.10 -i 3.11 -i 3.12 -i 3.13 -i pypy3.10 --manifest-path ${{ matrix.module }}/Cargo.toml + args: --release --out dist -i 3.9 -i 3.10 -i 3.11 -i 3.12 -i 3.13 -i pypy3.10 -i 3.13t --manifest-path ${{ matrix.module }}/Cargo.toml sccache: "true" manylinux: auto @@ -96,13 +96,13 @@ jobs: version: "0.4.x" - name: Install Python versions - run: uv python install 3.9 3.10 3.11 3.12 3.13 pypy3.10 + run: uv python install 3.9 3.10 3.11 3.12 3.13 pypy3.10 3.13t - name: Build wheels uses: PyO3/maturin-action@v1 with: target: ${{ matrix.platform.target }} - args: --release --out dist -i 3.9 -i 3.10 -i 3.11 -i 3.12 -i 3.13 -i pypy3.10 --manifest-path ${{ matrix.module }}/Cargo.toml + args: --release --out dist -i 3.9 -i 3.10 -i 3.11 -i 3.12 -i 3.13 -i pypy3.10 -i 3.13t --manifest-path ${{ matrix.module }}/Cargo.toml sccache: "true" manylinux: musllinux_1_2 - name: Upload wheels @@ -133,7 +133,7 @@ jobs: uses: PyO3/maturin-action@v1 with: target: ${{ matrix.platform.target }} - args: --release --out dist -i 3.9 -i 3.10 -i 3.11 -i 3.12 -i 3.13 --manifest-path ${{ matrix.module }}/Cargo.toml + args: --release --out dist -i 3.9 -i 3.10 -i 3.11 -i 3.12 -i 3.13 -i 3.13t --manifest-path ${{ matrix.module }}/Cargo.toml sccache: "true" - name: Upload wheels uses: actions/upload-artifact@v4 @@ -164,13 +164,13 @@ jobs: version: "0.4.x" - name: Install Python versions - run: uv python install 3.9 3.10 3.11 3.12 3.13 pypy3.10 + run: uv python install 3.9 3.10 3.11 3.12 3.13 pypy3.10 3.13t - name: Build wheels uses: PyO3/maturin-action@v1 with: target: ${{ matrix.platform.target }} - args: --release --out dist -i 3.9 -i 3.10 -i 3.11 -i 3.12 -i 3.13 -i pypy3.10 --manifest-path ${{ matrix.module }}/Cargo.toml + args: --release --out dist -i 3.9 -i 3.10 -i 3.11 -i 3.12 -i 3.13 -i pypy3.10 -i 3.13t --manifest-path ${{ matrix.module }}/Cargo.toml sccache: "true" - name: Upload wheels uses: actions/upload-artifact@v4 From 3e4d851505068b2db1d55a21c90c56e395569eae Mon Sep 17 00:00:00 2001 From: Nicholas Roberts Date: Mon, 16 Dec 2024 20:35:26 +1100 Subject: [PATCH 03/25] Minimum CI changes to fix 3.13t builds in CI --- .github/workflows/wheels.yml | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/.github/workflows/wheels.yml b/.github/workflows/wheels.yml index 0c4f235e..6bf6ba1e 100644 --- a/.github/workflows/wheels.yml +++ b/.github/workflows/wheels.yml @@ -125,9 +125,11 @@ jobs: steps: - uses: actions/checkout@v4 - - uses: actions/setup-python@v5 + - uses: Quansight-Labs/setup-python@v5 with: - python-version: 3.13 + python-version: | + 3.13t + 3.13 - name: Build wheels uses: PyO3/maturin-action@v1 From 9f7ef44c207769927d6f4ed0d8a47575c1c2c875 Mon Sep 17 00:00:00 2001 From: Nicholas Roberts Date: Sun, 23 Feb 2025 12:08:57 +1100 Subject: [PATCH 04/25] Pin to main branch of rust-numpy, boost pyo3 to match (NB: does not compile without subsequent commit (avoid keeping it though, since it erases timezone info)) --- Cargo.lock | 37 ++++++++++++++++--------------------- Cargo.toml | 4 ++-- pyo3-arrow/Cargo.toml | 4 ++-- 3 files changed, 20 insertions(+), 25 deletions(-) diff --git a/Cargo.lock b/Cargo.lock index 595900fb..162c60e0 100644 --- a/Cargo.lock +++ b/Cargo.lock @@ -1342,8 +1342,8 @@ dependencies = [ [[package]] name = "numpy" -version = "0.23.0-dev" -source = "git+https://github.com/davidhewitt/rust-numpy.git?branch=free-threading#2b364d319059923f0d94cc705f35e77680c55ccb" +version = "0.23.0" +source = "git+https://github.com/PyO3/rust-numpy.git?rev=8dd4f8e2934126a8323b8c8f00e69b0182b8ecee#8dd4f8e2934126a8323b8c8f00e69b0182b8ecee" dependencies = [ "half", "libc", @@ -1352,7 +1352,8 @@ dependencies = [ "num-integer", "num-traits", "pyo3", - "rustc-hash 1.1.0", + "pyo3-build-config", + "rustc-hash", ] [[package]] @@ -1598,9 +1599,9 @@ dependencies = [ [[package]] name = "pyo3" -version = "0.23.3" +version = "0.23.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e484fd2c8b4cb67ab05a318f1fd6fa8f199fcc30819f08f07d200809dba26c15" +checksum = "57fe09249128b3173d092de9523eaa75136bf7ba85e0d69eca241c7939c933cc" dependencies = [ "cfg-if", "chrono", @@ -1646,9 +1647,9 @@ dependencies = [ [[package]] name = "pyo3-build-config" -version = "0.23.3" +version = "0.23.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "dc0e0469a84f208e20044b98965e1561028180219e35352a2afaf2b942beff3b" +checksum = "1cd3927b5a78757a0d71aa9dff669f903b1eb64b54142a9bd9f757f8fde65fd7" dependencies = [ "once_cell", "target-lexicon", @@ -1656,9 +1657,9 @@ dependencies = [ [[package]] name = "pyo3-ffi" -version = "0.23.3" +version = "0.23.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "eb1547a7f9966f6f1a0f0227564a9945fe36b90da5a93b3933fc3dc03fae372d" +checksum = "dab6bb2102bd8f991e7749f130a70d05dd557613e39ed2deeee8e9ca0c4d548d" dependencies = [ "libc", "pyo3-build-config", @@ -1676,9 +1677,9 @@ dependencies = [ [[package]] name = "pyo3-macros" -version = "0.23.3" +version = "0.23.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "fdb6da8ec6fa5cedd1626c886fc8749bdcbb09424a86461eb8cdf096b7c33257" +checksum = "91871864b353fd5ffcb3f91f2f703a22a9797c91b9ab497b1acac7b07ae509c7" dependencies = [ "proc-macro2", "pyo3-macros-backend", @@ -1688,9 +1689,9 @@ dependencies = [ [[package]] name = "pyo3-macros-backend" -version = "0.23.3" +version = "0.23.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "38a385202ff5a92791168b1136afae5059d3ac118457bb7bc304c197c2d33e7d" +checksum = "43abc3b80bc20f3facd86cd3c60beed58c3e2aa26213f3cda368de39c60a27e4" dependencies = [ "heck", "proc-macro2", @@ -1732,7 +1733,7 @@ dependencies = [ "pin-project-lite", "quinn-proto", "quinn-udp", - "rustc-hash 2.0.0", + "rustc-hash", "rustls", "socket2", "thiserror", @@ -1749,7 +1750,7 @@ dependencies = [ "bytes", "rand", "ring", - "rustc-hash 2.0.0", + "rustc-hash", "rustls", "slab", "thiserror", @@ -1919,12 +1920,6 @@ version = "0.1.24" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "719b953e2095829ee67db738b3bfa9fa368c94900df327b3f07fe6e794d2fe1f" -[[package]] -name = "rustc-hash" -version = "1.1.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "08d43f7aa6b08d49f382cde6a7982047c3426db949b1424bc4b7ec9ae12c6ce2" - [[package]] name = "rustc-hash" version = "2.0.0" diff --git a/Cargo.toml b/Cargo.toml index 75f72807..db24693f 100644 --- a/Cargo.toml +++ b/Cargo.toml @@ -32,10 +32,10 @@ bytes = "1.7.0" half = "2" indexmap = "2" # numpy = "0.23" -numpy = { git = "https://github.com/davidhewitt/rust-numpy.git", branch = "free-threading" } +numpy = { git = "https://github.com/PyO3/rust-numpy.git", rev = "8dd4f8e2934126a8323b8c8f00e69b0182b8ecee" } object_store = "0.11" parquet = "53" -pyo3 = { version = "0.23", features = ["macros", "indexmap"] } +pyo3 = { version = "0.23.4", features = ["macros", "indexmap"] } # pyo3-arrow = "0.6" pyo3-arrow = { path = "./pyo3-arrow" } pyo3-async-runtimes = { version = "0.23", features = ["tokio-runtime"] } diff --git a/pyo3-arrow/Cargo.toml b/pyo3-arrow/Cargo.toml index 33139586..292d249c 100644 --- a/pyo3-arrow/Cargo.toml +++ b/pyo3-arrow/Cargo.toml @@ -23,11 +23,11 @@ arrow-array = "53" arrow-buffer = "53" arrow-schema = "53" arrow = { version = "53", features = ["ffi", "chrono-tz"] } -pyo3 = { version = "0.23", features = ["chrono", "indexmap"] } +pyo3 = { version = "0.23.4", features = ["chrono", "indexmap"] } half = "2" indexmap = "2" # numpy = { version = "0.23", features = ["half"] } -numpy = { git = "https://github.com/davidhewitt/rust-numpy.git", branch = "free-threading", features = ["half"] } +numpy = { git = "https://github.com/PyO3/rust-numpy.git", rev = "8dd4f8e2934126a8323b8c8f00e69b0182b8ecee", features = ["half"] } thiserror = "1" [dev-dependencies] From e4a6f493d72eb390ffea059c9db4323b837f1fbe Mon Sep 17 00:00:00 2001 From: Kyle Barron Date: Tue, 25 Mar 2025 13:01:09 -0400 Subject: [PATCH 05/25] use upstream actions/setup-python --- .github/workflows/wheels.yml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/wheels.yml b/.github/workflows/wheels.yml index 805da6cc..f17c970a 100644 --- a/.github/workflows/wheels.yml +++ b/.github/workflows/wheels.yml @@ -130,11 +130,11 @@ jobs: steps: - uses: actions/checkout@v4 - - uses: Quansight-Labs/setup-python@v5 + - uses: actions/setup-python@v5 with: python-version: | - 3.13t - 3.13 + 3.13t + 3.13 - name: Build wheels uses: PyO3/maturin-action@v1 From 0c01ce794bf58961db8092e6f83633eb1538cc20 Mon Sep 17 00:00:00 2001 From: Nicholas Roberts Date: Wed, 26 Mar 2025 19:54:36 +1100 Subject: [PATCH 06/25] Add pytest-freethreaded, boost (hopefully just dev/test-related) python version --- .python-version | 2 +- pyproject.toml | 3 +- uv.lock | 248 ++++-------------------------------------------- 3 files changed, 21 insertions(+), 232 deletions(-) diff --git a/.python-version b/.python-version index 2c073331..24ee5b1b 100644 --- a/.python-version +++ b/.python-version @@ -1 +1 @@ -3.11 +3.13 diff --git a/pyproject.toml b/pyproject.toml index 95c5dc06..2ee3025a 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -3,7 +3,7 @@ name = "arro3" version = "0.1.0" description = "Add your description here" readme = "README.md" -requires-python = ">=3.11" +requires-python = ">=3.13" dependencies = [] [tool.uv] @@ -23,6 +23,7 @@ dev-dependencies = [ "pip>=24.2", "pyarrow>=17.0.0", "pytest>=8.3.3", + "pytest-freethreaded>=0.1.0" ] [tool.ruff] diff --git a/uv.lock b/uv.lock index 4b220ad3..dad5a591 100644 --- a/uv.lock +++ b/uv.lock @@ -1,9 +1,5 @@ version = 1 -requires-python = ">=3.11" -resolution-markers = [ - "python_full_version >= '3.12'", - "python_full_version < '3.12'", -] +requires-python = ">=3.13" [[package]] name = "appnope" @@ -36,6 +32,7 @@ dev = [ { name = "pip" }, { name = "pyarrow" }, { name = "pytest" }, + { name = "pytest-freethreaded" }, ] [package.metadata] @@ -57,6 +54,7 @@ dev = [ { name = "pip", specifier = ">=24.2" }, { name = "pyarrow", specifier = ">=17.0.0" }, { name = "pytest", specifier = ">=8.3.3" }, + { name = "pytest-freethreaded", specifier = ">=0.1.0" }, ] [[package]] @@ -103,14 +101,6 @@ dependencies = [ ] sdist = { url = "https://files.pythonhosted.org/packages/94/49/26a7b0f3f35da4b5a65f081943b7bcd22d7002f5f0fb8098ec1ff21cb6ef/black-25.1.0.tar.gz", hash = "sha256:33496d5cd1222ad73391352b4ae8da15253c5de89b93a80b3e2c8d9a19ec2666", size = 649449 } wheels = [ - { url = "https://files.pythonhosted.org/packages/7e/4f/87f596aca05c3ce5b94b8663dbfe242a12843caaa82dd3f85f1ffdc3f177/black-25.1.0-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:a39337598244de4bae26475f77dda852ea00a93bd4c728e09eacd827ec929df0", size = 1614372 }, - { url = "https://files.pythonhosted.org/packages/e7/d0/2c34c36190b741c59c901e56ab7f6e54dad8df05a6272a9747ecef7c6036/black-25.1.0-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:96c1c7cd856bba8e20094e36e0f948718dc688dba4a9d78c3adde52b9e6c2299", size = 1442865 }, - { url = 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a/tests/io/__init__.py b/tests/io/__init__.py index e69de29b..63a097ab 100644 --- a/tests/io/__init__.py +++ b/tests/io/__init__.py @@ -0,0 +1,3 @@ +import pytest + +pytestmark = pytest.mark.freethreaded(threads=1, iterations=1) diff --git a/tests/io/test_ipc.py b/tests/io/test_ipc.py index c4c57764..52dcab11 100644 --- a/tests/io/test_ipc.py +++ b/tests/io/test_ipc.py @@ -4,6 +4,8 @@ import pyarrow as pa from arro3.io import read_ipc, read_ipc_stream, write_ipc, write_ipc_stream +from . import pytestmark # noqa: F401 + def test_ipc_round_trip_string(): table = pa.table({"a": [1, 2, 3, 4]}) diff --git a/tests/io/test_parquet.py b/tests/io/test_parquet.py index 1d41d34a..ff868925 100644 --- a/tests/io/test_parquet.py +++ b/tests/io/test_parquet.py @@ -4,6 +4,8 @@ import pyarrow.parquet as pq from arro3.io import read_parquet, write_parquet +from . import pytestmark # noqa: F401 + def test_parquet_round_trip(): table = pa.table({"a": [1, 2, 3, 4]}) From 37b9f69907a128a63dc28807866490565563f9a0 Mon Sep 17 00:00:00 2001 From: Nicholas Roberts Date: Fri, 28 Mar 2025 18:09:52 +1100 Subject: [PATCH 08/25] Wrap filesystem access in context-managed temp directories in tests. --- tests/io/__init__.py | 3 -- tests/io/test_ipc.py | 60 +++++++++++++++++++++++----------------- tests/io/test_parquet.py | 49 ++++++++++++++++---------------- 3 files changed, 59 insertions(+), 53 deletions(-) diff --git a/tests/io/__init__.py b/tests/io/__init__.py index 63a097ab..e69de29b 100644 --- a/tests/io/__init__.py +++ b/tests/io/__init__.py @@ -1,3 +0,0 @@ -import pytest - -pytestmark = pytest.mark.freethreaded(threads=1, iterations=1) diff --git a/tests/io/test_ipc.py b/tests/io/test_ipc.py index 52dcab11..b537cb27 100644 --- a/tests/io/test_ipc.py +++ b/tests/io/test_ipc.py @@ -1,32 +1,38 @@ from io import BytesIO from pathlib import Path +import tempfile import pyarrow as pa from arro3.io import read_ipc, read_ipc_stream, write_ipc, write_ipc_stream -from . import pytestmark # noqa: F401 - - def test_ipc_round_trip_string(): table = pa.table({"a": [1, 2, 3, 4]}) - write_ipc(table, "test.arrow") - table_retour = pa.table(read_ipc("test.arrow")) - assert table == table_retour + with tempfile.TemporaryDirectory() as dir: + ipc_path = f"{dir}/test.arrow" + ipc_stream_path = f"{dir}/test.arrows" - write_ipc_stream(table, "test.arrows") - table_retour = pa.table(read_ipc_stream("test.arrows")) - assert table == table_retour + write_ipc(table, ipc_path) + table_retour = pa.table(read_ipc(ipc_path)) + assert table == table_retour + + write_ipc_stream(table, ipc_stream_path) + table_retour = pa.table(read_ipc_stream(ipc_stream_path)) + assert table == table_retour def test_ipc_round_trip_path(): table = pa.table({"a": [1, 2, 3, 4]}) - write_ipc(table, Path("test.arrow")) - table_retour = pa.table(read_ipc(Path("test.arrow"))) - assert table == table_retour + with tempfile.TemporaryDirectory() as dir: + ipc_path = Path(dir) / "test.arrow" + ipc_stream_path = Path(dir) / "test.arrows" - write_ipc_stream(table, Path("test.arrows")) - table_retour = pa.table(read_ipc_stream(Path("test.arrows"))) - assert table == table_retour + write_ipc(table, ipc_path) + table_retour = pa.table(read_ipc(ipc_path)) + assert table == table_retour + + write_ipc_stream(table, ipc_stream_path) + table_retour = pa.table(read_ipc_stream(ipc_stream_path)) + assert table == table_retour def test_ipc_round_trip_buffer(): @@ -45,16 +51,18 @@ def test_ipc_round_trip_buffer(): def test_ipc_round_trip_compression(): table = pa.table({"a": [1, 2, 3, 4]}) - write_ipc(table, "test.arrow", compression="lz4") - table_retour = pa.table(read_ipc("test.arrow")) - assert table == table_retour + with tempfile.TemporaryDirectory() as dir: + tmp_path = f"{dir}/tset.arrow" + write_ipc(table, tmp_path, compression="lz4") + table_retour = pa.table(read_ipc(tmp_path)) + assert table == table_retour - table = pa.table({"a": [1, 2, 3, 4]}) - write_ipc(table, "test.arrow", compression="zstd") - table_retour = pa.table(read_ipc("test.arrow")) - assert table == table_retour + table = pa.table({"a": [1, 2, 3, 4]}) + write_ipc(table, tmp_path, compression="zstd") + table_retour = pa.table(read_ipc(tmp_path)) + assert table == table_retour - table = pa.table({"a": [1, 2, 3, 4]}) - write_ipc(table, "test.arrow", compression=None) - table_retour = pa.table(read_ipc("test.arrow")) - assert table == table_retour + table = pa.table({"a": [1, 2, 3, 4]}) + write_ipc(table, tmp_path, compression=None) + table_retour = pa.table(read_ipc(tmp_path)) + assert table == table_retour diff --git a/tests/io/test_parquet.py b/tests/io/test_parquet.py index ff868925..55369ef4 100644 --- a/tests/io/test_parquet.py +++ b/tests/io/test_parquet.py @@ -1,17 +1,16 @@ from io import BytesIO +import tempfile import pyarrow as pa import pyarrow.parquet as pq from arro3.io import read_parquet, write_parquet -from . import pytestmark # noqa: F401 - - def test_parquet_round_trip(): table = pa.table({"a": [1, 2, 3, 4]}) - write_parquet(table, "test.parquet") - table_retour = pa.table(read_parquet("test.parquet")) - assert table == table_retour + with tempfile.TemporaryDirectory() as dir: + write_parquet(table, f"{dir}/test.parquet") + table_retour = pa.table(read_parquet(f"{dir}/test.parquet")) + assert table == table_retour def test_parquet_round_trip_bytes_io(): @@ -26,21 +25,23 @@ def test_parquet_round_trip_bytes_io(): def test_copy_parquet_kv_metadata(): metadata = {"hello": "world"} table = pa.table({"a": [1, 2, 3]}) - write_parquet( - table, - "test.parquet", - key_value_metadata=metadata, - skip_arrow_metadata=True, - ) - - # Assert metadata was written, but arrow schema was not - pq_meta = pq.read_metadata("test.parquet").metadata - assert pq_meta[b"hello"] == b"world" - assert b"ARROW:schema" not in pq_meta.keys() - - # When reading with pyarrow, kv meta gets assigned to table - pa_table = pq.read_table("test.parquet") - assert pa_table.schema.metadata[b"hello"] == b"world" - - reader = read_parquet("test.parquet") - assert reader.schema.metadata[b"hello"] == b"world" + with tempfile.TemporaryDirectory() as dir: + tmp_path = f"{dir}/test.parquet" + write_parquet( + table, + tmp_path, + key_value_metadata=metadata, + skip_arrow_metadata=True, + ) + + # Assert metadata was written, but arrow schema was not + pq_meta = pq.read_metadata(tmp_path).metadata + assert pq_meta[b"hello"] == b"world" + assert b"ARROW:schema" not in pq_meta.keys() + + # When reading with pyarrow, kv meta gets assigned to table + pa_table = pq.read_table(tmp_path) + assert pa_table.schema.metadata[b"hello"] == b"world" + + reader = read_parquet(tmp_path) + assert reader.schema.metadata[b"hello"] == b"world" From e78f219ba88f286b7290b918ada02f13e7b7282c Mon Sep 17 00:00:00 2001 From: Nicholas Roberts Date: Fri, 28 Mar 2025 18:59:21 +1100 Subject: [PATCH 09/25] Re-mark io as freethreading safe --- arro3-io/src/lib.rs | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/arro3-io/src/lib.rs b/arro3-io/src/lib.rs index 025f9d81..1b11aa83 100644 --- a/arro3-io/src/lib.rs +++ b/arro3-io/src/lib.rs @@ -33,7 +33,7 @@ fn check_debug_build(py: Python) -> PyResult<()> { Ok(()) } -#[pymodule] +#[pymodule(gil_used=false)] fn _io(py: Python, m: &Bound) -> PyResult<()> { check_debug_build(py)?; From 12abd0f72dca40bce409f8fb37ef8049b53c2781 Mon Sep 17 00:00:00 2001 From: Nicholas Roberts Date: Fri, 28 Mar 2025 19:02:30 +1100 Subject: [PATCH 10/25] ruff format --- tests/io/test_ipc.py | 3 ++- tests/io/test_parquet.py | 3 ++- 2 files changed, 4 insertions(+), 2 deletions(-) diff --git a/tests/io/test_ipc.py b/tests/io/test_ipc.py index b537cb27..12909e90 100644 --- a/tests/io/test_ipc.py +++ b/tests/io/test_ipc.py @@ -1,10 +1,11 @@ +import tempfile from io import BytesIO from pathlib import Path -import tempfile import pyarrow as pa from arro3.io import read_ipc, read_ipc_stream, write_ipc, write_ipc_stream + def test_ipc_round_trip_string(): table = pa.table({"a": [1, 2, 3, 4]}) with tempfile.TemporaryDirectory() as dir: diff --git a/tests/io/test_parquet.py b/tests/io/test_parquet.py index 55369ef4..a6b2ad04 100644 --- a/tests/io/test_parquet.py +++ b/tests/io/test_parquet.py @@ -1,10 +1,11 @@ -from io import BytesIO import tempfile +from io import BytesIO import pyarrow as pa import pyarrow.parquet as pq from arro3.io import read_parquet, write_parquet + def test_parquet_round_trip(): table = pa.table({"a": [1, 2, 3, 4]}) with tempfile.TemporaryDirectory() as dir: From bd0fe7a1d7d460b0b3bf2a46711ab59efbce7ce0 Mon Sep 17 00:00:00 2001 From: Nicholas Roberts Date: Fri, 28 Mar 2025 19:03:14 +1100 Subject: [PATCH 11/25] cargo fmt --- arro3-io/src/lib.rs | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/arro3-io/src/lib.rs b/arro3-io/src/lib.rs index 1b11aa83..6c817220 100644 --- a/arro3-io/src/lib.rs +++ b/arro3-io/src/lib.rs @@ -33,7 +33,7 @@ fn check_debug_build(py: Python) -> PyResult<()> { Ok(()) } -#[pymodule(gil_used=false)] +#[pymodule(gil_used = false)] fn _io(py: Python, m: &Bound) -> PyResult<()> { check_debug_build(py)?; From d55c441e1c998efa6d98b93f0f99ceb298f6b73d Mon Sep 17 00:00:00 2001 From: Kyle Barron Date: Tue, 9 Sep 2025 12:35:36 -0400 Subject: [PATCH 12/25] Add comments to tests --- tests/io/test_ipc.py | 37 ++++++++++++++++++++++--------------- tests/io/test_parquet.py | 25 +++++++++++++++---------- 2 files changed, 37 insertions(+), 25 deletions(-) diff --git a/tests/io/test_ipc.py b/tests/io/test_ipc.py index 12909e90..0b53d3ea 100644 --- a/tests/io/test_ipc.py +++ b/tests/io/test_ipc.py @@ -1,6 +1,6 @@ -import tempfile from io import BytesIO from pathlib import Path +from tempfile import TemporaryDirectory import pyarrow as pa from arro3.io import read_ipc, read_ipc_stream, write_ipc, write_ipc_stream @@ -8,9 +8,12 @@ def test_ipc_round_trip_string(): table = pa.table({"a": [1, 2, 3, 4]}) - with tempfile.TemporaryDirectory() as dir: - ipc_path = f"{dir}/test.arrow" - ipc_stream_path = f"{dir}/test.arrows" + # We can't use tmp_path fixture with pytest-freethreading + with TemporaryDirectory() as tmp_path: + tmp_path = Path(tmp_path) + # Explicitly test with passing string input + ipc_path = f"{tmp_path}/test.arrow" + ipc_stream_path = f"{tmp_path}/test.arrows" write_ipc(table, ipc_path) table_retour = pa.table(read_ipc(ipc_path)) @@ -23,9 +26,11 @@ def test_ipc_round_trip_string(): def test_ipc_round_trip_path(): table = pa.table({"a": [1, 2, 3, 4]}) - with tempfile.TemporaryDirectory() as dir: - ipc_path = Path(dir) / "test.arrow" - ipc_stream_path = Path(dir) / "test.arrows" + # We can't use tmp_path fixture with pytest-freethreading + with TemporaryDirectory() as tmp_path: + tmp_path = Path(tmp_path) + ipc_path = tmp_path / "test.arrow" + ipc_stream_path = tmp_path / "test.arrows" write_ipc(table, ipc_path) table_retour = pa.table(read_ipc(ipc_path)) @@ -52,18 +57,20 @@ def test_ipc_round_trip_buffer(): def test_ipc_round_trip_compression(): table = pa.table({"a": [1, 2, 3, 4]}) - with tempfile.TemporaryDirectory() as dir: - tmp_path = f"{dir}/tset.arrow" - write_ipc(table, tmp_path, compression="lz4") - table_retour = pa.table(read_ipc(tmp_path)) + # We can't use tmp_path fixture with pytest-freethreading + with TemporaryDirectory() as tmp_path: + tmp_path = Path(tmp_path) + ipc_path = tmp_path / "test.arrow" + write_ipc(table, ipc_path, compression="lz4") + table_retour = pa.table(read_ipc(ipc_path)) assert table == table_retour table = pa.table({"a": [1, 2, 3, 4]}) - write_ipc(table, tmp_path, compression="zstd") - table_retour = pa.table(read_ipc(tmp_path)) + write_ipc(table, ipc_path, compression="zstd") + table_retour = pa.table(read_ipc(ipc_path)) assert table == table_retour table = pa.table({"a": [1, 2, 3, 4]}) - write_ipc(table, tmp_path, compression=None) - table_retour = pa.table(read_ipc(tmp_path)) + write_ipc(table, ipc_path, compression=None) + table_retour = pa.table(read_ipc(ipc_path)) assert table == table_retour diff --git a/tests/io/test_parquet.py b/tests/io/test_parquet.py index a6b2ad04..e0c0fb86 100644 --- a/tests/io/test_parquet.py +++ b/tests/io/test_parquet.py @@ -1,4 +1,5 @@ -import tempfile +from pathlib import Path +from tempfile import TemporaryDirectory from io import BytesIO import pyarrow as pa @@ -8,9 +9,11 @@ def test_parquet_round_trip(): table = pa.table({"a": [1, 2, 3, 4]}) - with tempfile.TemporaryDirectory() as dir: - write_parquet(table, f"{dir}/test.parquet") - table_retour = pa.table(read_parquet(f"{dir}/test.parquet")) + # We can't use tmp_path fixture with pytest-freethreading + with TemporaryDirectory() as tmp_path: + tmp_path = Path(tmp_path) + write_parquet(table, tmp_path / "test.parquet") + table_retour = pa.table(read_parquet(tmp_path / "test.parquet")) assert table == table_retour @@ -26,23 +29,25 @@ def test_parquet_round_trip_bytes_io(): def test_copy_parquet_kv_metadata(): metadata = {"hello": "world"} table = pa.table({"a": [1, 2, 3]}) - with tempfile.TemporaryDirectory() as dir: - tmp_path = f"{dir}/test.parquet" + # We can't use tmp_path fixture with pytest-freethreading + with TemporaryDirectory() as tmp_path: + tmp_path = Path(tmp_path) + pq_path = tmp_path / "test.parquet" write_parquet( table, - tmp_path, + pq_path, key_value_metadata=metadata, skip_arrow_metadata=True, ) # Assert metadata was written, but arrow schema was not - pq_meta = pq.read_metadata(tmp_path).metadata + pq_meta = pq.read_metadata(pq_path).metadata assert pq_meta[b"hello"] == b"world" assert b"ARROW:schema" not in pq_meta.keys() # When reading with pyarrow, kv meta gets assigned to table - pa_table = pq.read_table(tmp_path) + pa_table = pq.read_table(pq_path) assert pa_table.schema.metadata[b"hello"] == b"world" - reader = read_parquet(tmp_path) + reader = read_parquet(pq_path) assert reader.schema.metadata[b"hello"] == b"world" From b146b39edf75fd06c0339d2ef8ab3a8d34699045 Mon Sep 17 00:00:00 2001 From: Kyle Barron Date: Tue, 9 Sep 2025 12:37:17 -0400 Subject: [PATCH 13/25] Split docs deps into separate group --- .github/workflows/docs.yml | 4 +- pyproject.toml | 27 ++++++---- uv.lock | 102 +++++++++++++++++++------------------ 3 files changed, 73 insertions(+), 60 deletions(-) diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml index 8bfb52e1..00bd3de1 100644 --- a/.github/workflows/docs.yml +++ b/.github/workflows/docs.yml @@ -68,8 +68,8 @@ jobs: if echo $VERSION | cut -c 2- | grep -q "[A-Za-z]"; then echo "Is beta version" # For beta versions publish but don't set as latest - uv run mike deploy $VERSION --update-aliases --push + uv run --group docs mike deploy $VERSION --update-aliases --push else echo "Is NOT beta version" - uv run mike deploy $VERSION latest --update-aliases --push + uv run --group docs mike deploy $VERSION latest --update-aliases --push fi diff --git a/pyproject.toml b/pyproject.toml index b051a93f..8194b03c 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,5 +1,7 @@ [project] -name = "arro3" +# This top-level project only manages the dev environment. +# The real arro3-* libraries are defined in each `arro3-*` directory. +name = "dev-environment" version = "0.1.0" description = "Add your description here" readme = "README.md" @@ -8,23 +10,16 @@ dependencies = [] [tool.uv] dev-dependencies = [ - "black>=24.10.0", "boto3>=1.35.38", "geoarrow-types>=0.3.0", - "griffe-inherited-docstrings>=1.0.1", "ipykernel>=6.29.5", "maturin>=1.7.4", - "mike>=2.1.3", - "mkdocs-material[imaging]>=9.6.7", - "mkdocs-redirects>=1.2.2", - "mkdocs>=1.6.1", - "mkdocstrings[python]>=0.28.3", "pandas-stubs>=2.2.3.250527", "pandas>=2.2.3", "pip>=24.2", "pyarrow>=21.0.0", "pytest>=8.3.3", - "pytest-freethreaded>=0.1.0" + "pytest-freethreaded>=0.1.0", ] [tool.ruff.lint] @@ -43,3 +38,17 @@ select = [ "F401", # Allow unused imports in __init__.py files "F403", # unable to detect undefined names ] + +[dependency-groups] +# This is separate from dev deps because mkdocs-material[imaging] doesn't +# support Python 3.13 free-threaded +docs = [ + "black>=24.10.0", + "griffe-inherited-docstrings>=1.0.1", + "mike>=2.1.3", + "mkdocs-material[imaging]>=9.6.7", + "mkdocs-redirects>=1.2.2", + "mkdocs>=1.6.1", + "mkdocs>=1.6.1", + "mkdocstrings[python]>=0.28.3", +] diff --git a/uv.lock b/uv.lock index 0f594e2d..123f50bc 100644 --- a/uv.lock +++ b/uv.lock @@ -11,55 +11,6 @@ wheels = [ { url = "https://files.pythonhosted.org/packages/81/29/5ecc3a15d5a33e31b26c11426c45c501e439cb865d0bff96315d86443b78/appnope-0.1.4-py2.py3-none-any.whl", hash = "sha256:502575ee11cd7a28c0205f379b525beefebab9d161b7c964670864014ed7213c", size = 4321, upload-time = "2024-02-06T09:43:09.663Z" }, ] -[[package]] -name = "arro3" -version = "0.1.0" -source = { virtual = "." } - -[package.dev-dependencies] -dev = [ - { name = "black" }, - { name = "boto3" }, - { name = "geoarrow-types" }, - { name = "griffe-inherited-docstrings" }, - { name = 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name = "pandas-stubs" }, + { name = "pip" }, + { name = "pyarrow" }, + { name = "pytest" }, + { name = "pytest-freethreaded" }, +] +docs = [ + { name = "black" }, + { name = "griffe-inherited-docstrings" }, + { name = "mike" }, + { name = "mkdocs" }, + { name = "mkdocs-material", extra = ["imaging"] }, + { name = "mkdocs-redirects" }, + { name = "mkdocstrings", extra = ["python"] }, +] + +[package.metadata] + +[package.metadata.requires-dev] +dev = [ + { name = "boto3", specifier = ">=1.35.38" }, + { name = "geoarrow-types", specifier = ">=0.3.0" }, + { name = "ipykernel", specifier = ">=6.29.5" }, + { name = "maturin", specifier = ">=1.7.4" }, + { name = "pandas", specifier = ">=2.2.3" }, + { name = "pandas-stubs", specifier = ">=2.2.3.250527" }, + { name = "pip", specifier = ">=24.2" }, + { name = "pyarrow", specifier = ">=21.0.0" }, + { name = "pytest", specifier = ">=8.3.3" }, + { name = "pytest-freethreaded", specifier = ">=0.1.0" }, +] +docs = [ + { name = "black", specifier = ">=24.10.0" }, + { name = "griffe-inherited-docstrings", specifier = ">=1.0.1" }, + { name = "mike", specifier = ">=2.1.3" }, + { name = "mkdocs", specifier = ">=1.6.1" }, + { name = "mkdocs-material", extras = ["imaging"], specifier = ">=9.6.7" }, + { name = "mkdocs-redirects", specifier = ">=1.2.2" }, + { name = "mkdocstrings", extras = ["python"], specifier = ">=0.28.3" }, +] + [[package]] name = "executing" version = "2.2.1" From 20e59e8664b9ef0148d8e61d15cd1c65c00214ab Mon Sep 17 00:00:00 2001 From: Kyle Barron Date: Tue, 9 Sep 2025 12:38:50 -0400 Subject: [PATCH 14/25] Add pre-commit as dev dep --- pyproject.toml | 1 + tests/io/test_parquet.py | 2 +- uv.lock | 77 ++++++++++++++++++++++++++++++++++++++++ 3 files changed, 79 insertions(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 8194b03c..053e367c 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -20,6 +20,7 @@ dev-dependencies = [ "pyarrow>=21.0.0", "pytest>=8.3.3", "pytest-freethreaded>=0.1.0", + "pre-commit>=4.3.0", ] [tool.ruff.lint] diff --git a/tests/io/test_parquet.py b/tests/io/test_parquet.py index e0c0fb86..3daa8242 100644 --- a/tests/io/test_parquet.py +++ b/tests/io/test_parquet.py @@ -1,6 +1,6 @@ +from io import BytesIO from pathlib import Path from tempfile import TemporaryDirectory -from io import BytesIO import pyarrow as pa import pyarrow.parquet as pq diff --git a/uv.lock b/uv.lock index 123f50bc..6c62592b 100644 --- a/uv.lock +++ b/uv.lock @@ -173,6 +173,15 @@ wheels = [ { url = "https://files.pythonhosted.org/packages/ae/3a/dbeec9d1ee0844c679f6bb5d6ad4e9f198b1224f4e7a32825f47f6192b0c/cffi-2.0.0-cp314-cp314t-win_arm64.whl", hash = "sha256:0a1527a803f0a659de1af2e1fd700213caba79377e27e4693648c2923da066f9", size = 184195, upload-time = "2025-09-08T23:23:43.004Z" }, ] +[[package]] +name = "cfgv" +version = "3.4.0" +source = { registry = "https://pypi.org/simple" } +sdist = { url = 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"virtualenv" +version = "20.34.0" +source = { registry = "https://pypi.org/simple" } +dependencies = [ + { name = "distlib" }, + { name = "filelock" }, + { name = "platformdirs" }, +] +sdist = { url = "https://files.pythonhosted.org/packages/1c/14/37fcdba2808a6c615681cd216fecae00413c9dab44fb2e57805ecf3eaee3/virtualenv-20.34.0.tar.gz", hash = "sha256:44815b2c9dee7ed86e387b842a84f20b93f7f417f95886ca1996a72a4138eb1a", size = 6003808, upload-time = "2025-08-13T14:24:07.464Z" } +wheels = [ + { url = "https://files.pythonhosted.org/packages/76/06/04c8e804f813cf972e3262f3f8584c232de64f0cde9f703b46cf53a45090/virtualenv-20.34.0-py3-none-any.whl", hash = "sha256:341f5afa7eee943e4984a9207c025feedd768baff6753cd660c857ceb3e36026", size = 5983279, upload-time = "2025-08-13T14:24:05.111Z" }, +] + [[package]] name = "watchdog" version = "6.0.0" From 711724e849f2db19824f62d8d9a0b98de0315c0e Mon Sep 17 00:00:00 2001 From: Kyle Barron Date: Tue, 9 Sep 2025 12:39:22 -0400 Subject: [PATCH 15/25] update cargo lockfile --- Cargo.lock | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/Cargo.lock b/Cargo.lock index 5cb138c8..4a0c155a 100644 --- a/Cargo.lock +++ b/Cargo.lock @@ -2331,15 +2331,15 @@ checksum = "e502f78cdbb8ba4718f566c418c52bc729126ffd16baee5baa718cf25dd5a69a" [[package]] name = "tempfile" -version = "3.21.0" +version = "3.22.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "15b61f8f20e3a6f7e0649d825294eaf317edce30f82cf6026e7e4cb9222a7d1e" +checksum = "84fa4d11fadde498443cca10fd3ac23c951f0dc59e080e9f4b93d4df4e4eea53" dependencies = [ "fastrand", "getrandom 0.3.3", "once_cell", "rustix", - "windows-sys 0.60.2", + "windows-sys 0.61.0", ] [[package]] From ea1bb3f4ef52add09113998d980371a13241b64f Mon Sep 17 00:00:00 2001 From: Kyle Barron Date: Tue, 9 Sep 2025 12:40:00 -0400 Subject: [PATCH 16/25] regen lockfile --- pyo3-arrow/Cargo.lock | 612 +++++++++++++----------------------------- 1 file changed, 189 insertions(+), 423 deletions(-) diff --git a/pyo3-arrow/Cargo.lock b/pyo3-arrow/Cargo.lock index b556bd46..93c07bb0 100644 --- a/pyo3-arrow/Cargo.lock +++ b/pyo3-arrow/Cargo.lock @@ -16,12 +16,6 @@ dependencies = [ "zerocopy", ] -[[package]] -name = "android-tzdata" -version = "0.1.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e999941b234f3131b00bc13c22d06e8c5ff726d1b6318ac7eb276997bbb4fef0" - [[package]] name = "android_system_properties" version = "0.1.5" @@ -31,47 +25,11 @@ dependencies = [ "libc", ] -[[package]] -name = "arrow" -version = "53.3.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c91839b07e474b3995035fd8ac33ee54f9c9ccbbb1ea33d9909c71bffdf1259d" -dependencies = [ - "arrow-arith", - "arrow-array", - "arrow-buffer", - "arrow-cast", - "arrow-csv", - "arrow-data", - "arrow-ipc", - "arrow-json", - "arrow-ord", - "arrow-row", - "arrow-schema", - "arrow-select", - "arrow-string", -] - -[[package]] -name = "arrow-arith" -version = "53.3.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "855c57c4efd26722b044dcd3e348252560e3e0333087fb9f6479dc0bf744054f" -dependencies = [ - "arrow-array", - "arrow-buffer", - "arrow-data", - "arrow-schema", - "chrono", - "half", - "num", -] - [[package]] name = "arrow-array" -version = "53.3.0" +version = "56.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "bd03279cea46569acf9295f6224fbc370c5df184b4d2ecfe97ccb131d5615a7f" +checksum = "744109142cdf8e7b02795e240e20756c2a782ac9180d4992802954a8f871c0de" dependencies = [ "ahash", "arrow-buffer", @@ -86,9 +44,9 @@ dependencies = [ [[package]] name = "arrow-buffer" -version = "53.3.0" +version = "56.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9e4a9b9b1d6d7117f6138e13bc4dd5daa7f94e671b70e8c9c4dc37b4f5ecfc16" +checksum = "601bb103c4c374bcd1f62c66bcea67b42a2ee91a690486c37d4c180236f11ccc" dependencies = [ "bytes", "half", @@ -97,9 +55,9 @@ dependencies = [ [[package]] name = "arrow-cast" -version = "53.3.0" +version = "56.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "bc70e39916e60c5b7af7a8e2719e3ae589326039e1e863675a008bee5ffe90fd" +checksum = "eed61d9d73eda8df9e3014843def37af3050b5080a9acbe108f045a316d5a0be" dependencies = [ "arrow-array", "arrow-buffer", @@ -116,114 +74,32 @@ dependencies = [ "ryu", ] -[[package]] -name = "arrow-csv" -version = "53.3.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "789b2af43c1049b03a8d088ff6b2257cdcea1756cd76b174b1f2600356771b97" -dependencies = [ - "arrow-array", - "arrow-buffer", - "arrow-cast", - "arrow-data", - "arrow-schema", - "chrono", - "csv", - "csv-core", - "lazy_static", - "lexical-core", - "regex", -] - [[package]] name = "arrow-data" -version = "53.3.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e4e75edf21ffd53744a9b8e3ed11101f610e7ceb1a29860432824f1834a1f623" 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source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8e415279094ea70323c032c6e739c48ad8d80e78a09bef7117b8718ad5bf3722" +checksum = "be8b2e0052cd20d36d64f32640b68a5ab54d805d24a473baee5d52017c85536c" dependencies = [ "ahash", "arrow-array", @@ -233,23 +109,6 @@ dependencies = [ "num", ] -[[package]] -name = "arrow-string" -version = "53.3.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "11d956cae7002eb8d83a27dbd34daaea1cf5b75852f0b84deb4d93a276e92bbf" -dependencies = [ - "arrow-array", - "arrow-buffer", - "arrow-data", - "arrow-schema", - "arrow-select", - "memchr", - "num", - "regex", - "regex-syntax", -] - [[package]] name = "atoi" version = "2.0.0" @@ -261,9 +120,9 @@ dependencies = [ [[package]] name = "autocfg" -version = "1.3.0" +version = "1.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0c4b4d0bd25bd0b74681c0ad21497610ce1b7c91b1022cd21c80c6fbdd9476b0" +checksum = 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dependencies = [ "static_assertions", ] [[package]] name = "lexical-write-float" -version = "1.0.2" +version = "1.0.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "6e7c3ad4e37db81c1cbe7cf34610340adc09c322871972f74877a712abc6c809" +checksum = "c5afc668a27f460fb45a81a757b6bf2f43c2d7e30cb5a2dcd3abf294c78d62bd" dependencies = [ "lexical-util", "lexical-write-integer", @@ -561,9 +391,9 @@ dependencies = [ [[package]] name = "lexical-write-integer" -version = "1.0.2" +version = "1.0.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "eb89e9f6958b83258afa3deed90b5de9ef68eef090ad5086c791cd2345610162" +checksum = "629ddff1a914a836fb245616a7888b62903aae58fa771e1d83943035efa0f978" dependencies = [ "lexical-util", "static_assertions", @@ -571,27 +401,27 @@ dependencies = [ [[package]] name = "libc" -version = "0.2.155" +version = "0.2.175" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = 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matrix: - python-version: ["3.9", "3.12"] + python-version: ["3.9", "3.12", "3.13", "3.13t"] steps: - uses: actions/checkout@v4 @@ -70,6 +70,11 @@ jobs: run: | uv run pytest tests + - name: Run python tests with --require-gil-disabled + if: matrix.python-version == '3.13t' + run: | + uv run pytest --require-gil-disabled + # Ensure docs build without warnings - name: Check docs - run: uv run mkdocs build --strict + run: uv run --group docs mkdocs build --strict diff --git a/pyproject.toml b/pyproject.toml index 053e367c..962bc905 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -50,6 +50,5 @@ docs = [ "mkdocs-material[imaging]>=9.6.7", "mkdocs-redirects>=1.2.2", "mkdocs>=1.6.1", - "mkdocs>=1.6.1", "mkdocstrings[python]>=0.28.3", ] From 18761720456e4b79356f6a77f7c208684607166f Mon Sep 17 00:00:00 2001 From: Kyle Barron Date: Tue, 9 Sep 2025 12:50:21 -0400 Subject: [PATCH 18/25] install python with uv in ci --- .github/workflows/test-python.yml | 23 +++++++++++------------ 1 file changed, 11 insertions(+), 12 deletions(-) diff --git a/.github/workflows/test-python.yml b/.github/workflows/test-python.yml index 7fbb050c..9888b400 100644 --- a/.github/workflows/test-python.yml +++ b/.github/workflows/test-python.yml @@ -47,33 +47,32 @@ jobs: - uses: Swatinem/rust-cache@v2 - - name: Set up Python - id: setup-python - uses: actions/setup-python@v5 - with: - python-version: ${{ matrix.python-version }} - - name: Install a specific version of uv uses: astral-sh/setup-uv@v3 with: enable-cache: true - version: "0.4.x" + version: "0.8.x" + + - name: Set up Python with uv + run: / + uv python install ${{ matrix.python-version }} - name: Build rust submodules run: | # Note: core module must be first, because it's depended on by others - uv run maturin dev -m arro3-core/Cargo.toml - uv run maturin dev -m arro3-compute/Cargo.toml - uv run maturin dev -m arro3-io/Cargo.toml + uv run --python ${{ matrix.python-version }} maturin dev -m arro3-core/Cargo.toml + uv run --python ${{ matrix.python-version }} maturin dev -m arro3-compute/Cargo.toml + uv run --python ${{ matrix.python-version }} maturin dev -m arro3-io/Cargo.toml - name: Run python tests + if: matrix.python-version != '3.13t' run: | - uv run pytest tests + uv run --python ${{ matrix.python-version }} pytest tests - name: Run python tests with --require-gil-disabled if: matrix.python-version == '3.13t' run: | - uv run pytest --require-gil-disabled + uv run --python ${{ matrix.python-version }} pytest tests --require-gil-disabled # Ensure docs build without warnings - name: Check docs From b489b0ae8acbaae4ff6ed62403abebe317a8fabb Mon Sep 17 00:00:00 2001 From: Kyle Barron Date: Tue, 9 Sep 2025 13:01:25 -0400 Subject: [PATCH 19/25] typo --- .github/workflows/test-python.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/test-python.yml b/.github/workflows/test-python.yml index 9888b400..b68a924e 100644 --- a/.github/workflows/test-python.yml +++ b/.github/workflows/test-python.yml @@ -54,7 +54,7 @@ jobs: version: "0.8.x" - name: Set up Python with uv - run: / + run: | uv python install ${{ matrix.python-version }} - name: Build rust submodules From 97e4b970fd1d352f6ce39fddf6d107d8af78eb15 Mon Sep 17 00:00:00 2001 From: Kyle Barron Date: Tue, 9 Sep 2025 13:02:24 -0400 Subject: [PATCH 20/25] reduce requires-python --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 962bc905..a3724859 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -5,7 +5,7 @@ name = "dev-environment" version = "0.1.0" description = "Add your description here" readme = "README.md" -requires-python = ">=3.13" +requires-python = ">=3.9" dependencies = [] [tool.uv] From 1db2474193cc14bca910de74ffe7232774094287 Mon Sep 17 00:00:00 2001 From: Kyle Barron Date: Tue, 9 Sep 2025 13:05:43 -0400 Subject: [PATCH 21/25] pytest-freethreaded only on 3.13+ --- pyproject.toml | 4 +- uv.lock | 813 +++++++++++++++++++++++++++++++++++++++++++++++-- 2 files changed, 787 insertions(+), 30 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index a3724859..ebbe8be6 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -14,12 +14,12 @@ dev-dependencies = [ "geoarrow-types>=0.3.0", "ipykernel>=6.29.5", "maturin>=1.7.4", - "pandas-stubs>=2.2.3.250527", + "pandas-stubs", "pandas>=2.2.3", "pip>=24.2", "pyarrow>=21.0.0", "pytest>=8.3.3", - "pytest-freethreaded>=0.1.0", + "pytest-freethreaded>=0.1.0;python_version>='3.13'", "pre-commit>=4.3.0", ] diff --git a/uv.lock b/uv.lock index 6c62592b..66f4f414 100644 --- a/uv.lock +++ b/uv.lock @@ -1,6 +1,13 @@ version = 1 revision = 3 -requires-python = ">=3.13" +requires-python = ">=3.9" +resolution-markers = [ + "python_full_version >= '3.13'", + "python_full_version == '3.12.*'", + "python_full_version == '3.11.*'", + "python_full_version == '3.10.*'", + "python_full_version < '3.10'", +] [[package]] name = "appnope" @@ -48,18 +55,37 @@ name 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b/arro3-compute/pyproject.toml index e2e6b72d..c1654017 100644 --- a/arro3-compute/pyproject.toml +++ b/arro3-compute/pyproject.toml @@ -1,5 +1,5 @@ [build-system] -requires = ["maturin>=1.4.0,<2.0"] +requires = ["maturin>=1.9.4,<2.0"] build-backend = "maturin" [project] diff --git a/arro3-core/pyproject.toml b/arro3-core/pyproject.toml index ac5f98b0..e4d7ed23 100644 --- a/arro3-core/pyproject.toml +++ b/arro3-core/pyproject.toml @@ -1,5 +1,5 @@ [build-system] -requires = ["maturin>=1.4.0,<2.0"] +requires = ["maturin>=1.9.4,<2.0"] build-backend = "maturin" [project] diff --git a/arro3-io/pyproject.toml b/arro3-io/pyproject.toml index 18beee4f..fea07cf0 100644 --- a/arro3-io/pyproject.toml +++ b/arro3-io/pyproject.toml @@ -1,5 +1,5 @@ [build-system] -requires = ["maturin>=1.4.0,<2.0"] +requires = ["maturin>=1.9.4,<2.0"] build-backend = "maturin" [project] diff --git a/pyproject.toml b/pyproject.toml index ebbe8be6..99584eeb 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -13,7 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15:26:43 +0200 Subject: [PATCH 24/25] version reordering --- .github/workflows/wheels.yml | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/.github/workflows/wheels.yml b/.github/workflows/wheels.yml index ebde2ed4..e63f1aef 100644 --- a/.github/workflows/wheels.yml +++ b/.github/workflows/wheels.yml @@ -56,7 +56,7 @@ jobs: version: "0.4.x" - name: Install Python versions - run: uv python install 3.9 3.10 3.11 3.12 3.13 pypy3.10 3.13t + run: uv python install 3.9 3.10 3.11 3.12 3.13 3.13t pypy3.10 - name: Build wheels uses: PyO3/maturin-action@v1 @@ -64,7 +64,7 @@ jobs: target: ${{ matrix.platform.target }} # As of Nov 2024, it was necessary to manually specify -i 3.13 to get # maturin to find the executable. --find-interpreter did not find it. - args: --release --out dist -i 3.9 -i 3.10 -i 3.11 -i 3.12 -i 3.13 -i pypy3.10 -i 3.13t --manifest-path ${{ matrix.module }}/Cargo.toml + args: --release --out dist -i 3.9 -i 3.10 -i 3.11 -i 3.12 -i 3.13 -i 3.13t -i pypy3.10 --manifest-path ${{ matrix.module }}/Cargo.toml sccache: "true" manylinux: ${{ matrix.platform.manylinux }} @@ -101,13 +101,13 @@ jobs: version: "0.4.x" - name: Install Python versions - run: uv python install 3.9 3.10 3.11 3.12 3.13 pypy3.10 3.13t + run: uv python install 3.9 3.10 3.11 3.12 3.13 3.13t pypy3.10 - name: Build wheels uses: PyO3/maturin-action@v1 with: target: ${{ matrix.platform.target }} - args: --release --out dist -i 3.9 -i 3.10 -i 3.11 -i 3.12 -i 3.13 -i pypy3.10 -i 3.13t --manifest-path ${{ matrix.module }}/Cargo.toml + args: --release --out dist -i 3.9 -i 3.10 -i 3.11 -i 3.12 -i 3.13 -i 3.13t -i pypy3.10 --manifest-path ${{ matrix.module }}/Cargo.toml sccache: "true" manylinux: musllinux_1_2 - name: Upload wheels @@ -171,13 +171,13 @@ jobs: version: "0.4.x" - name: Install Python versions - run: uv python install 3.9 3.10 3.11 3.12 3.13 pypy3.10 3.13t + run: uv python install 3.9 3.10 3.11 3.12 3.13 3.13t pypy3.10 - name: Build wheels uses: PyO3/maturin-action@v1 with: target: ${{ matrix.platform.target }} - args: --release --out dist -i 3.9 -i 3.10 -i 3.11 -i 3.12 -i 3.13 -i pypy3.10 -i 3.13t --manifest-path ${{ matrix.module }}/Cargo.toml + args: --release --out dist -i 3.9 -i 3.10 -i 3.11 -i 3.12 -i 3.13 -i 3.13t -i pypy3.10 --manifest-path ${{ matrix.module }}/Cargo.toml sccache: "true" - name: Upload wheels uses: actions/upload-artifact@v4 From b692107bfb0e495b214baa74c8f27e99a018c0b0 Mon Sep 17 00:00:00 2001 From: Kyle Barron Date: Fri, 3 Oct 2025 15:26:56 +0200 Subject: [PATCH 25/25] lock --- Cargo.lock | 28 +++++++--------------------- 1 file changed, 7 insertions(+), 21 deletions(-) diff --git a/Cargo.lock b/Cargo.lock index 476c383b..f1819dd8 100644 --- a/Cargo.lock +++ b/Cargo.lock @@ -464,8 +464,7 @@ version = "7.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "3f8e18d0dca9578507f13f9803add0df13362b02c501c1c17734f0dbb52eaf0b" dependencies = [ - "strum", - "strum_macros", + "unicode-segmentation", "unicode-width", ] @@ -2289,25 +2288,6 @@ version = "1.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "a2eb9349b6444b326872e140eb1cf5e7c522154d69e7a0ffb0fb81c06b37543f" -[[package]] -name = "strum" -version = "0.26.3" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8fec0f0aef304996cf250b31b5a10dee7980c85da9d759361292b8bca5a18f06" - -[[package]] -name = "strum_macros" -version = "0.26.4" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4c6bee85a5a24955dc440386795aa378cd9cf82acd5f764469152d2270e581be" -dependencies = [ - "heck", - "proc-macro2", - "quote", - "rustversion", - "syn", -] - [[package]] name = "subtle" version = "2.6.1" @@ -2607,6 +2587,12 @@ version = "1.0.18" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "5a5f39404a5da50712a4c1eecf25e90dd62b613502b7e925fd4e4d19b5c96512" +[[package]] +name = "unicode-segmentation" +version = 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