Regarding pip3 install of requirement.txt
I removed versions and let pip install the latest version. The next pip3 did not work:
af2) [satyshur@KAFKA alphafold]$ pip3 install --upgrade "jax[cuda111]" -f
https://storage.googleapis.com/jax-releases/jax_releases.html
&& pip3 install jaxlib==0.1.70+cuda111 -f
https://storage.googleapis.com/jax-releases/jax_releases.html
Looking in links: https://storage.googleapis.com/jax-releases/jax_releases.html
Requirement already satisfied: jax[cuda111] in /home/satyshur/.conda/envs/af2/lib/python3.8/site-packages (0.4.13)
Collecting jax[cuda111]
Downloading https://storage.googleapis.com/jax-releases/jax/jax-0.4.21-py3-none-any.whl (1.7 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.7/1.7 MB 25.9 MB/s eta 0:00:00
WARNING: jax 0.4.21 does not provide the extra 'cuda111'
Requirement already satisfied: ml-dtypes>=0.2.0 in /home/satyshur/.conda/envs/af2/lib/python3.8/site-packages (from jax[cuda111]) (0.2.0)
Requirement already satisfied: numpy>=1.22 in /home/satyshur/.conda/envs/af2/lib/python3.8/site-packages (from jax[cuda111]) (1.22.3)
Requirement already satisfied: opt-einsum in /home/satyshur/.conda/envs/af2/lib/python3.8/site-packages (from jax[cuda111]) (3.3.0)
Requirement already satisfied: scipy>=1.9 in /home/satyshur/.conda/envs/af2/lib/python3.8/site-packages (from jax[cuda111]) (1.10.1)
Requirement already satisfied: importlib-metadata>=4.6 in /home/satyshur/.conda/envs/af2/lib/python3.8/site-packages (from jax[cuda111]) (7.0.0)
Requirement already satisfied: zipp>=0.5 in /home/satyshur/.conda/envs/af2/lib/python3.8/site-packages (from importlib-metadata>=4.6->jax[cuda111]) (3.17.0)
INFO: pip is looking at multiple versions of jax to determine which version is compatible with other requirements. This could take a while.
WARNING: jax 0.4.21 does not provide the extra 'cuda111'
Downloading https://storage.googleapis.com/jax-releases/jax/jax-0.4.20-py3-none-any.whl (1.7 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.7/1.7 MB 44.3 MB/s eta 0:00:00
WARNING: jax 0.4.20 does not provide the extra 'cuda111'
WARNING: jax 0.4.20 does not provide the extra 'cuda111'
Downloading https://storage.googleapis.com/jax-releases/jax/jax-0.4.19-py3-none-any.whl (1.7 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.7/1.7 MB 37.5 MB/s eta 0:00:00
WARNING: jax 0.4.19 does not provide the extra 'cuda111'
WARNING: jax 0.4.19 does not provide the extra 'cuda111'
Downloading https://storage.googleapis.com/jax-releases/jax/jax-0.4.18-py3-none-any.whl (1.7 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.7/1.7 MB 28.7 MB/s eta 0:00:00
WARNING: jax 0.4.18 does not provide the extra 'cuda111'
WARNING: jax 0.4.18 does not provide the extra 'cuda111'
Downloading https://storage.googleapis.com/jax-releases/jax/jax-0.4.17-py3-none-any.whl (1.7 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.7/1.7 MB 22.1 MB/s eta 0:00:00
WARNING: jax 0.4.17 does not provide the extra 'cuda111'
WARNING: jax 0.4.17 does not provide the extra 'cuda111'
Downloading https://storage.googleapis.com/jax-releases/jax/jax-0.4.16-py3-none-any.whl (1.6 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.6/1.6 MB 38.7 MB/s eta 0:00:00
WARNING: jax 0.4.16 does not provide the extra 'cuda111'
WARNING: jax 0.4.16 does not provide the extra 'cuda111'
Downloading https://storage.googleapis.com/jax-releases/jax/jax-0.4.14.tar.gz (1.3 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.3/1.3 MB 31.9 MB/s eta 0:00:00
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing metadata (pyproject.toml) ... done
WARNING: jax 0.4.14 does not provide the extra 'cuda111'
WARNING: jax 0.4.14 does not provide the extra 'cuda111'
WARNING: jax 0.4.13 does not provide the extra 'cuda111'
Looking in links: https://storage.googleapis.com/jax-releases/jax_releases.html
ERROR: Ignored the following yanked versions: 0.1.63, 0.4.0
ERROR: Could not find a version that satisfies the requirement jaxlib==0.1.70+cuda111 (from versions: 0.1.32, 0.1.40, 0.1.41, 0.1.42, 0.1.43, 0.1.44, 0.1.46, 0.1.50, 0.1.51, 0.1.52, 0.1.55, 0.1.56, 0.1.57, 0.1.58, 0.1.59, 0.1.60, 0.1.61, 0.1.62, 0.1.63, 0.1.64, 0.1.65, 0.1.66, 0.1.67, 0.1.68, 0.1.69, 0.1.70, 0.1.71, 0.1.72, 0.1.73, 0.1.74, 0.1.75, 0.1.76, 0.3.0, 0.3.2, 0.3.5, 0.3.7, 0.3.8, 0.3.10, 0.3.14, 0.3.15, 0.3.18, 0.3.20, 0.3.22, 0.3.24, 0.3.25, 0.4.1, 0.4.2, 0.4.3, 0.4.4, 0.4.6, 0.4.7, 0.4.9, 0.4.10, 0.4.11, 0.4.12, 0.4.13)
ERROR: No matching distribution found for jaxlib==0.1.70+cuda111
indeed, the html does not have any matching jaxlib==0.1.70+cuda111
Regarding pip3 install of requirement.txt
I removed versions and let pip install the latest version. The next pip3 did not work:
af2) [satyshur@KAFKA alphafold]$ pip3 install --upgrade "jax[cuda111]" -f
https://storage.googleapis.com/jax-releases/jax_releases.html
&& pip3 install jaxlib==0.1.70+cuda111 -f
https://storage.googleapis.com/jax-releases/jax_releases.html
Looking in links: https://storage.googleapis.com/jax-releases/jax_releases.html
Requirement already satisfied: jax[cuda111] in /home/satyshur/.conda/envs/af2/lib/python3.8/site-packages (0.4.13)
Collecting jax[cuda111]
Downloading https://storage.googleapis.com/jax-releases/jax/jax-0.4.21-py3-none-any.whl (1.7 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.7/1.7 MB 25.9 MB/s eta 0:00:00
WARNING: jax 0.4.21 does not provide the extra 'cuda111'
Requirement already satisfied: ml-dtypes>=0.2.0 in /home/satyshur/.conda/envs/af2/lib/python3.8/site-packages (from jax[cuda111]) (0.2.0)
Requirement already satisfied: numpy>=1.22 in /home/satyshur/.conda/envs/af2/lib/python3.8/site-packages (from jax[cuda111]) (1.22.3)
Requirement already satisfied: opt-einsum in /home/satyshur/.conda/envs/af2/lib/python3.8/site-packages (from jax[cuda111]) (3.3.0)
Requirement already satisfied: scipy>=1.9 in /home/satyshur/.conda/envs/af2/lib/python3.8/site-packages (from jax[cuda111]) (1.10.1)
Requirement already satisfied: importlib-metadata>=4.6 in /home/satyshur/.conda/envs/af2/lib/python3.8/site-packages (from jax[cuda111]) (7.0.0)
Requirement already satisfied: zipp>=0.5 in /home/satyshur/.conda/envs/af2/lib/python3.8/site-packages (from importlib-metadata>=4.6->jax[cuda111]) (3.17.0)
INFO: pip is looking at multiple versions of jax to determine which version is compatible with other requirements. This could take a while.
WARNING: jax 0.4.21 does not provide the extra 'cuda111'
Downloading https://storage.googleapis.com/jax-releases/jax/jax-0.4.20-py3-none-any.whl (1.7 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.7/1.7 MB 44.3 MB/s eta 0:00:00
WARNING: jax 0.4.20 does not provide the extra 'cuda111'
WARNING: jax 0.4.20 does not provide the extra 'cuda111'
Downloading https://storage.googleapis.com/jax-releases/jax/jax-0.4.19-py3-none-any.whl (1.7 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.7/1.7 MB 37.5 MB/s eta 0:00:00
WARNING: jax 0.4.19 does not provide the extra 'cuda111'
WARNING: jax 0.4.19 does not provide the extra 'cuda111'
Downloading https://storage.googleapis.com/jax-releases/jax/jax-0.4.18-py3-none-any.whl (1.7 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.7/1.7 MB 28.7 MB/s eta 0:00:00
WARNING: jax 0.4.18 does not provide the extra 'cuda111'
WARNING: jax 0.4.18 does not provide the extra 'cuda111'
Downloading https://storage.googleapis.com/jax-releases/jax/jax-0.4.17-py3-none-any.whl (1.7 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.7/1.7 MB 22.1 MB/s eta 0:00:00
WARNING: jax 0.4.17 does not provide the extra 'cuda111'
WARNING: jax 0.4.17 does not provide the extra 'cuda111'
Downloading https://storage.googleapis.com/jax-releases/jax/jax-0.4.16-py3-none-any.whl (1.6 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.6/1.6 MB 38.7 MB/s eta 0:00:00
WARNING: jax 0.4.16 does not provide the extra 'cuda111'
WARNING: jax 0.4.16 does not provide the extra 'cuda111'
Downloading https://storage.googleapis.com/jax-releases/jax/jax-0.4.14.tar.gz (1.3 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.3/1.3 MB 31.9 MB/s eta 0:00:00
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing metadata (pyproject.toml) ... done
WARNING: jax 0.4.14 does not provide the extra 'cuda111'
WARNING: jax 0.4.14 does not provide the extra 'cuda111'
WARNING: jax 0.4.13 does not provide the extra 'cuda111'
Looking in links: https://storage.googleapis.com/jax-releases/jax_releases.html
ERROR: Ignored the following yanked versions: 0.1.63, 0.4.0
ERROR: Could not find a version that satisfies the requirement jaxlib==0.1.70+cuda111 (from versions: 0.1.32, 0.1.40, 0.1.41, 0.1.42, 0.1.43, 0.1.44, 0.1.46, 0.1.50, 0.1.51, 0.1.52, 0.1.55, 0.1.56, 0.1.57, 0.1.58, 0.1.59, 0.1.60, 0.1.61, 0.1.62, 0.1.63, 0.1.64, 0.1.65, 0.1.66, 0.1.67, 0.1.68, 0.1.69, 0.1.70, 0.1.71, 0.1.72, 0.1.73, 0.1.74, 0.1.75, 0.1.76, 0.3.0, 0.3.2, 0.3.5, 0.3.7, 0.3.8, 0.3.10, 0.3.14, 0.3.15, 0.3.18, 0.3.20, 0.3.22, 0.3.24, 0.3.25, 0.4.1, 0.4.2, 0.4.3, 0.4.4, 0.4.6, 0.4.7, 0.4.9, 0.4.10, 0.4.11, 0.4.12, 0.4.13)
ERROR: No matching distribution found for jaxlib==0.1.70+cuda111
indeed, the html does not have any matching jaxlib==0.1.70+cuda111