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Should --scanrev be default for AssemblePairs? #67

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@ssnn-airr

Original report by Jason Vander Heiden (Bitbucket: javh, GitHub: javh).


Should we replace --scanrev with --skiprev in AssemblePairs and make the reverse scan process default? Because it is usually best to specify --scanrev. We originally made it non-default for the sake of backward compatibility.

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