ALP/pyproject.toml at main · igomezv/ALP · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
[project]
name = "alp"
version = "1.0.0"
description = "Astro Layer Perceptron (ALP): ANN for astrophysical regression."
authors = [
  { name = "Isidro Gomez-Vargas", email = "isidro.gomezvargas@unige.ch" }
]
readme = "README.md"
license = { text = "MIT" }
requires-python = ">=3.9"

# --- Core dependencies required by the framework ---
dependencies = [
  "numpy>=1.26.0",
  "scipy>=1.12.0",
  "pandas>=2.2.0",
  "scikit-learn>=1.3.0",
  "tensorflow>=2.15.0",
  "h5py>=3.10.0",
  "matplotlib>=3.8.0",
  "seaborn>=0.13.0",
  "optuna>=3.6.0",
  "deap>=1.4.0",
  "tqdm>=4.66.0",
  "astropy>=6.0.0",
  "astroquery>=0.4.6",
  "pyastronomy>=0.21.0",
  "statsmodels>=0.14.0",
  "tables",
]

[project.optional-dependencies]
viz = ["plotly>=5.22.0"]
notebooks = ["jupyterlab>=4.2.0", "ipykernel>=6.29.0"]
dev = ["pytest>=8.2.0", "pre-commit>=3.8.0", "ruff>=0.6.4", "black>=24.8.0"]
bayes = ["dynesty>=2.1.4", "tensorflow-probability>=0.23.0", "theano-pymc>=1.1.0", "arviz>=0.17.0"]

all = [
  "plotly>=5.22.0",
  "jupyterlab>=4.2.0",
  "ipykernel>=6.29.0",
  "pytest>=8.2.0",
  "pre-commit>=3.8.0",
  "ruff>=0.6.4",
  "black>=24.8.0",
  "dynesty>=2.1.4",
  "tensorflow-probability>=0.23.0",
  "theano-pymc>=1.1.0",
  "arviz>=0.17.0"
]

# Conda environment configuration
[tool.conda-env]
name = "alp"
channels = ["conda-forge", "defaults"]

[tool.conda-env.dependencies]
# Core ML/DL packages
tensorflow = ">=2.15.0"
numpy = ">=1.26.0"
scipy = ">=1.12.0"
pandas = ">=2.2.0"
scikit-learn = ">=1.3.0"

# Data handling
h5py = ">=3.10.0"
tables = "*"

# Visualization
matplotlib = ">=3.8.0"
seaborn = ">=0.13.0"

# Optimization and hyperparameter tuning
optuna = ">=3.6.0"
deap = ">=1.4.0"

# Progress bars and utilities
tqdm = ">=4.66.0"

# Astronomy-specific packages
astropy = ">=6.0.0"
astroquery = ">=0.4.6"
pyastronomy = ">=0.21.0"

# Statistical modeling
statsmodels = ">=0.14.0"

# Optional dependencies
plotly = ">=5.22.0"
jupyterlab = ">=4.2.0"
ipykernel = ">=6.29.0"

# Development tools
pytest = ">=8.2.0"
ruff = ">=0.6.4"
black = ">=24.8.0"


[tool.ruff]
line-length = 99
lint.extend-select = ["B", "I", "W"]

[tool.setuptools.packages.find]
include = ["alp*"]

[tool.setuptools.package-data]
"*" = ["*.txt", "*.cpp", "*.c"]