diff --git a/traitar/hmmer2filtered_best.py b/traitar/hmmer2filtered_best.py index 514b95f..9829e46 100755 --- a/traitar/hmmer2filtered_best.py +++ b/traitar/hmmer2filtered_best.py @@ -47,7 +47,7 @@ def aggregate_domain_hits(filtered_df, out_f): #sort by gene identifier and Pfam with open(out_f, 'w') as out_fo: ps.DataFrame(filtered_df.columns).T.to_csv(out_f, sep = "\t", index = False, header = False, mode = 'a') - filtered_df.sort(columns = ["target name", "query name"], inplace = True) + filtered_df.sort_values(by = ["target name", "query name"], inplace = True) if filtered_df.shape[0] > 0: current_max = filtered_df.iloc[0,] else: