Environment:
- CAGECAT 1.0
- cblaster 1.4.1
- remote mode
- database:
nr
Command used:
cblaster search \
--output /repo/cagecat/jobs/I570I750O840E66/results/I570I750O840E66_summary.txt \
--plot /repo/cagecat/jobs/I570I750O840E66/results/I570I750O840E66_plot.html \
--blast_file /repo/cagecat/jobs/I570I750O840E66/results/I570I750O840E66_blasthits.txt \
--mode remote \
--database nr \
--query_file cagecat/jobs/I570I750O840E66/uploads/genome_test.faa \
--hitlist_size 10000 \
--session_file /repo/cagecat/jobs/I570I750O840E66/results/I570I750O840E66_session.json \
--max_evalue 0.01 \
--min_identity 30 \
--min_coverage 50 \
--gap 20000 \
--unique 3 \
--min_hits 3 \
--percentage 0 \
--output_decimals 2 \
--binary /repo/cagecat/jobs/I570I750O840E66/results/I570I750O840E66_binary.txt \
--binary_decimals 2 \
--binary_key len
Log:
[11:04:17] INFO - Starting cblaster in remote mode
[11:04:18] INFO - Request Identifier (RID): VRP1JKJZ014
...
[11:16:44] INFO - Search has completed successfully!
[11:16:44] INFO - Retrieving results for search VRP1JKJZ014
Traceback (most recent call last):
File "/miniconda3/bin/cblaster", line 8, in <module>
sys.exit(main())
File "/miniconda3/lib/python3.9/site-packages/cblaster/main.py", line 432, in main
cblaster(
File "/miniconda3/lib/python3.9/site-packages/cblaster/main.py", line 318, in cblaster
rid, results = remote.search(
File "/miniconda3/lib/python3.9/site-packages/cblaster/remote.py", line 371, in search
results = retrieve(rid, hitlist_size=hitlist_size)
File "/miniconda3/lib/python3.9/site-packages/cblaster/remote.py", line 208, in retrieve
for line in re.search("<PRE>(.+?)</PRE>", response.text, re.DOTALL)
AttributeError: 'NoneType' object has no attribute 'group'
Environment:
nrCommand used: