Can't finish the sorting process using ms4alg.sort

[miaojun1023]

Hello developers! I have some problem using ms4alg.sort sorting the polymer probe data that your paper provide. It was stucked for hours with 7.6GB file in the following lines but never get error message.

Found 1 clusters for channel 10 (phase1)...
Computing templates for channel 10 (phase1)...

Re-assigning events for channel 12 (phase1)...

Found 3 clusters for channel 9 (phase1)...
Computing templates for channel 9 (phase1)...

Re-assigning events for channel 10 (phase1)...

Re-assigning events for channel 9 (phase1)...

Re-assigning 2 events from 9 to 8 with dt=-3 (k=2)

I was using 32G RAM. the memory is not fully used. The commend line I do this is followed.

ml-run-process ms4alg.sort --inputs timeseries:i140703-001-filt.mda geom:geom.csv --outputs firings_out:i140703-001-firings.mda --parameters adjacency_radius:100 detect_sign:-1 detect_threshold:3 clip_size:40

I also would like to know how I can sort 3 mda files at one time, which commend line I should use. Thank you so much for the help!

[miaojun1023]

This is resolved when I add ml-run-process ephys.whiten before the sorting process. I still have one question. Is that possible to sort the 3 parts of polymer probe data at once? or I should do it one by one and observe each result separately?

Thank you so much!