hi,
I got this error due /tmp not enough space:
Activating conda environment: .snakemake/conda/494b36264bdbc60ecb4ea7dcbbf4aff3_
sort: sort: write error: /tmp/sortSVYd6x write error : /tmp/sort4rz1MP: No space left on device
: No space left on device
Error: Broken pipe (os error 32)
Error: Broken pipe (os error 32)
[Mon Jun 22 21:15:48 2026]
Error in rule decorate_fibers_chromosome:
jobid: 17200
input: results/J724_1/J724_1-fire-v0.1-filtered.cram, results/J724_1/J724_1-fire-v0.1-filtered.cram.crai
output: temp/J724_1/decorate/v0.1-chr6.bed.gz, temp/J724_1/decorate/v0.1-chr6.dec.bed.gz
conda-env: /output/run_FIRE/.snakemake/conda/494b36264bdbc60ecb4ea7dcbbf4aff3_
shell:
Is there a parameter to specify the temporary directory, not use /tmp?
Thanks a lot.
hi,
I got this error due /tmp not enough space:
Is there a parameter to specify the temporary directory, not use /tmp?
Thanks a lot.