From d2a99aa75ad4eb361ada337621eecab39145cb19 Mon Sep 17 00:00:00 2001 From: Nikolaj Gubonin Date: Fri, 13 Mar 2026 06:53:48 +0100 Subject: [PATCH] Fix CORRECT_FAA to add newline before appending sequences --- lib/make/makefile.phylo | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lib/make/makefile.phylo b/lib/make/makefile.phylo index 54eee8e..5ba5dd5 100644 --- a/lib/make/makefile.phylo +++ b/lib/make/makefile.phylo @@ -26,7 +26,7 @@ deleted_sequences: $(wildcard problem_sequences.*) REMOVE_RARE = sort -u $(wordlist 2,4,$^) > /tmp/$(basename $@).delete; \ grep '>' $< | grep -v -F -f /tmp/$(basename $@).delete | sed 's/.*@//' > $@ -CORRECT_FAA = cat $(word 3,$^) > $@; grep -F -A 1 -f $(wordlist 1,2,$^) | grep -v '^--' >> $@ +CORRECT_FAA = cat $(word 3,$^) > $@; printf "\n" >> $@; grep -F -A 1 -f $(wordlist 1,2,$^) | grep -v '^--' >> $@ %.correct_sequences: %.faa deleted_sequences $(REMOVE_RARE)