The fastq.gzs2erne-filters target in makefile.erne builds a list of dependencies to automatically execute ERNE-filter once in the current directory for a certain database. After the first run, however, execution of the target will run ERNE again on all samples. I have tried to filter-out targets with the expected names so that they do not appear again, but it doesn't work yet.
The
fastq.gzs2erne-filterstarget inmakefile.ernebuilds a list of dependencies to automatically execute ERNE-filter once in the current directory for a certain database. After the first run, however, execution of the target will run ERNE again on all samples. I have tried to filter-out targets with the expected names so that they do not appear again, but it doesn't work yet.