diff --git a/array/DNAm/preprocessing/QC.rmd b/array/DNAm/preprocessing/QC.rmd index ce840464..81f7f136 100755 --- a/array/DNAm/preprocessing/QC.rmd +++ b/array/DNAm/preprocessing/QC.rmd @@ -954,6 +954,14 @@ corrplot(cor(QCmetrics[,colsToKeep], use = "p")) ``` +The correlation plot above contains four normalisation violence metrics +(assessing the degree of difference between normalised and raw betas): + +* rmsd: root mean squared (of) differences +* sdd: standard deviation (of) differences +* sadd: standard absolute deviation (of) differences (|differences|) +* srms: standardised root mean squared (rmsd/sdd) + ## Reconfirm genetic relationships are correct