The coloring of the edges seems to be off. I want to confirm which way the colors should actually be.
Here is a screenshot of one of the reference figures that Stephen sent me:
Here is the current output:
I generated the current output after removing the p-value filter and adding filter for SCORE2 where SCORE2=-log(padj) * (LFC)^2.
I can see that the coloring is similar between the two, however the provided reference figure appears graded by multiple colors. I am not sure why. Maybe multiple genes per box?
The coloring of the edges seems to be off. I want to confirm which way the colors should actually be.
Here is a screenshot of one of the reference figures that Stephen sent me:
Here is the current output:
I generated the current output after removing the p-value filter and adding filter for SCORE2 where SCORE2=-log(padj) * (LFC)^2.
I can see that the coloring is similar between the two, however the provided reference figure appears graded by multiple colors. I am not sure why. Maybe multiple genes per box?