diff --git a/data/STRchive-loci.json b/data/STRchive-loci.json index 908f69e2..6732e8e5 100644 --- a/data/STRchive-loci.json +++ b/data/STRchive-loci.json @@ -1354,7 +1354,7 @@ "locus_structure": [ { "motif": "AAAAT", - "count": 7, + "count": 15, "type": "internal_repeat" }, { diff --git a/scripts/make-catalog.py b/scripts/make-catalog.py index a07077bc..e0b1ce60 100644 --- a/scripts/make-catalog.py +++ b/scripts/make-catalog.py @@ -313,7 +313,7 @@ def atarva_catalog(row, genome = 'hg38'): bed_string += f"{row['chrom']}\t{start}\t{stop}\t{motif}\t{motif_len}\t{this_id}\n" elif struct_dict['type'] == 'interruption' or struct_dict['type'] == 'internal_repeat': # interruptions and internal repeats are not included in the structure - continue + bed_string += f"{row['chrom']}\t{start}\t{stop}\t{motif}\t{motif_len}\t{this_id}\n" else: # this is a flank repeat bed_string += f"{row['chrom']}\t{start}\t{stop}\t{motif}\t{motif_len}\t{this_id}_flank\n"