algorithm-example/example.yaml at master · crg-bioinformatics-genomics/algorithm-example · GitHub

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---
title:      example
name:       example
title_styled:   >
    example
version:    1.0
description:    >
    example is an algorithm for the visualization of protein physico-chemical profiles.

description_short:    >
    example is an algorithm for the visualization of protein physico-chemical profiles.

nav_links:
    -   title:  >
            example Home
        href:   >
            http://service.tartaglialab.com/new_submission/example
    -   title:  >
            Tutorial
        href:   >
            http://service.tartaglialab.com/static_files/shared/tutorial_example.html
    -   title:  >
            Group page @ CRG
        href:   >
            http://pasteur.crg.es/portal/page/portal/827A462EAB6802B3E04012AC0E01291B

form_fields:
    -   name: title
        description: Submission label (optional)
        required: No
        type: text
    -   name: protein_seq
        description: Protein sequence (FASTA format)
        required: Yes
        type: textarea
    -   name: email
        description: Email address (optional, used for notification)
        type: email
        required: No
    -   name: feature
        description: <b>Physico-chemical features</b>
        type: radio
        required: Yes
        entries:
            -   title:  Alpha-helix (Deleage-Roux, 1987)
                value:  alphahelix
            -   title:  Beta-sheet (Chou-Fasman, 1978)
                value:  betasheet
            -   title:  Disorder (Dunker, 2008)
                value:  disorder
            -   title:  Hydrophobicity (Eisenberg, 1984)
                value:  hydrophobicity

examples:
    -   reference_id:   75964
        title:          My first profile
        description:    (Me et al. 2015)

algorithm:
    command:              "example.py -output_dir=<output_dir>"
    processing_timeout:   7200

# for the processing part
output:
    -