diff --git a/docs/source/documentation/brainglobe-atlasapi/_atlas_table.md b/docs/source/documentation/brainglobe-atlasapi/_atlas_table.md index fd42ec90..995d5647 100644 --- a/docs/source/documentation/brainglobe-atlasapi/_atlas_table.md +++ b/docs/source/documentation/brainglobe-atlasapi/_atlas_table.md @@ -36,4 +36,5 @@ | [Allen CCFv2 Mouse Brain Atlas](https://doi.org/10.1038/nature13186) | 25 micron | P56 | Nissl | [![More info](https://img.shields.io/badge/More%20info-Click%20here-blue)](https://brainglobe.info/documentation/brainglobe-atlasapi/usage/atlas-details.html#allen-ccfv2-mouse-brain-atlas) | | [Allen CCFv2 Mouse Fiber Tracts Atlas](https://doi.org/10.1038/nature13186) | 25 micron | P56 | Nissl | [![More info](https://img.shields.io/badge/More%20info-Click%20here-blue)](https://brainglobe.info/documentation/brainglobe-atlasapi/usage/atlas-details.html#allen-ccfv2-mouse-fiber-tracts-atlas) | | [Allen CCFv2 Developmental Mouse Brain Atlas](https://doi.org/10.1038/nature13186) | 25 micron | P56 | Nissl | [![More info](https://img.shields.io/badge/More%20info-Click%20here-blue)](https://brainglobe.info/documentation/brainglobe-atlasapi/usage/atlas-details.html#allen-ccfv2-developmental-mouse-brain-atlas) | +| [Duke Mouse Brain Atlas](https://doi.org/10.1126/sciadv.adq8089) | 15, 25, 50, 75, 100, and 150 micron | P90 ± 2 days | MRI | [![More info](https://img.shields.io/badge/More%20info-Click%20here-blue)](https://brainglobe.info/documentation/brainglobe-atlasapi/usage/atlas-details.html#duke-mouse-brain-atlas) | | [Hoops Tawny Dragon Brain Atlas](https://doi.org/10.1007/s00429-021-02282-z) | 50 micron | Adult | MRI | [![More info](https://img.shields.io/badge/More%20info-Click%20here-blue)](https://brainglobe.info/documentation/brainglobe-atlasapi/usage/atlas-details.html#hoops-tawny-dragon-brain-atlas) | diff --git a/docs/source/documentation/brainglobe-atlasapi/usage/atlas-details.md b/docs/source/documentation/brainglobe-atlasapi/usage/atlas-details.md index 04a08ca0..1d836398 100644 --- a/docs/source/documentation/brainglobe-atlasapi/usage/atlas-details.md +++ b/docs/source/documentation/brainglobe-atlasapi/usage/atlas-details.md @@ -441,8 +441,17 @@ manually delineated. Available versions: * `dorr_mouse_mri_32um` - + [![View in neuroglancer](https://img.shields.io/badge/Neuroglancer-View%20atlas-blue)](https://neuroglancer-demo.appspot.com/#!https://brainglobe.s3.amazonaws.com/ng_state_files/dorr_mouse_mri.json) +### [Duke Mouse Brain Atlas](https://doi.org/10.1126/sciadv.adq8089) +This atlas from [Mansour et al. (2025)](https://doi.org/10.1126/sciadv.adq8089) is a 15 μm isotropic MRH-based stereotaxic atlas of the adult C57BL/6J mouse brain. The source atlas was built from five 90 ± 2 day male mice scanned in skull, limiting tissue deformation from cranial dissection and conventional histology. Micro-CT images of the skull provide bregma and lambda landmarks in the same stereotaxic space. + +BrainGlobe includes the mean diffusivity template as the main reference image, the source annotation image, generated meshes, and 11 additional registered reference images. RCCFv3 is the Duke team's reduced version of the Allen CCFv3 label set, in which related structures smaller than 0.1 mm3 are grouped into larger regions to reduce registration noise from small structures. + +Available versions: +* `duke_mouse_15um` + +[![View in neuroglancer](https://img.shields.io/badge/Neuroglancer-View%20atlas-blue)](https://neuroglancer-demo.appspot.com/#!https://brainglobe.s3.amazonaws.com/ng_state_files/duke_mouse.json) ### [CArea Mouse Atlas](https://doi.org/10.64898/2026.01.20.700446) @@ -561,6 +570,7 @@ This is a symmetric atlas of the tawny dragon lizard (Ctenophorus decresii) brai made from averaged MRI images of 13 male tawny dragon lizards. This atlas is only available at 50μm resolution: * `hoops_tawny_dragon_50um` + [![View in neuroglancer](https://img.shields.io/badge/Neuroglancer-View%20atlas-blue)](https://neuroglancer-demo.appspot.com/#!https://brainglobe.s3.amazonaws.com/ng_state_files/hoops_tawny_dragon.json)