I'm seeing these errors when I run piPipes:
piPipes_smallRNA_bed2_to_bw.sh: line 32: 13962 Segmentation fault piPipes_bed2_to_bedGraph -i $OUTDIR/${INPUT_BED_NAME%bed2}sorted.bed2 -c $CHROM -p $CPU -o $OUTDIR/${INPUT_BED_NAME%bed2}sorted.
piPipes_smallRNA_bed2_to_bw.sh: line 33: 13965 Segmentation fault piPipes_bed2_to_bedGraph -i $OUTDIR/${INPUT_BED_NAME%bed2}sorted.uniq.bed2 -c $CHROM -p $CPU -o $OUTDIR/${INPUT_BED_NAME%bed2}sorted.uniq.
As far as I can tell, these are the only errors thrown. The transposon_piRNAcluster_mapping_normalized_by_mirna and the bigWig_normalized_by_mirna folders are empty. Any ideas?
I'm seeing these errors when I run piPipes:$OUTDIR/$ {INPUT_BED_NAME%bed2}sorted.bed2 -c $CHROM -p $CPU -o $OUTDIR/$ {INPUT_BED_NAME%bed2}sorted.
piPipes_smallRNA_bed2_to_bw.sh: line 32: 13962 Segmentation fault piPipes_bed2_to_bedGraph -i
piPipes_smallRNA_bed2_to_bw.sh: line 33: 13965 Segmentation fault piPipes_bed2_to_bedGraph -i$OUTDIR/$ {INPUT_BED_NAME%bed2}sorted.uniq.bed2 -c $CHROM -p $CPU -o $OUTDIR/$ {INPUT_BED_NAME%bed2}sorted.uniq.
As far as I can tell, these are the only errors thrown. The transposon_piRNAcluster_mapping_normalized_by_mirna and the bigWig_normalized_by_mirna folders are empty. Any ideas?