`compute_contribution_to_DA.py::355` reads: `pd.read_csv(function_mapping_file, dtype={0: str}, sep="]t") ` which causes the file to be read incorrectly and therefore FishTaco fails to aggregate KOs to pathways or modules. The `sep` argument should be `\t`.
compute_contribution_to_DA.py::355reads:pd.read_csv(function_mapping_file, dtype={0: str}, sep="]t")which causes the file to be read incorrectly and therefore FishTaco fails to aggregate KOs to pathways or modules.
The
separgument should be\t.