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Add EMBO Oeiras course photo to Acknowledgments Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
Fix broken/backwards links and a header typo across the wiki Corrects a typo'd page slug, two swapped link-text/target pairs, a lowercase page reference, an undefined reference-style link, and a broken image path pointing at a nonexistent _images/ folder, plus a misspelled "gtools" heading in Usage-gdtools.md. Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
Add CLAUDE.md for Claude Code guidance Documents repo structure, wiki link conventions, and page groupings for this documentation-only repository. Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
Updated Tutorial Curation Ecoli LTEE (markdown)
Update for change to brefito workflow
Updated Tutorial Clones (markdown)
Updated Output (markdown)
Merge branch 'master' of https://github.com/barricklab/breseq.wiki
Updated JC side image file
Updated Home (markdown)
Updated Usage breseq (markdown)
Updated Reference Sequence File Formats (markdown)
Updated Installation (markdown)
Updated GenomeDiff File Format (markdown)
Updated Tutorial Curation Common Cases (markdown)