Dear Aaron Weimann,
Thank you for develop Traitar, I think this program would be very useful to better understand the biological meaning of our data.
I have a issue that I can not understand when I run traitar. I have succefully installed traitar using python2.7 virtualenv. But when I run traitar I get the following...
traitar phenotype genus_in genus_sample-file from_nucleotides genus_out
Traceback (most recent call last): File "/lustre/groups/cbi/ecastron/Katterinne/Psychrobacter_glacincola/Traitar/pyc1traitar/bin/traitar", line 492, in <module> args.func(args) File "/lustre/groups/cbi/ecastron/Katterinne/Psychrobacter_glacincola/Traitar/pyc1traitar/bin/traitar", line 32, in phenolyze p = Traitar(args.input_dir, args.output_dir, args.sample2file, args.cpus, args.rearrange_heatmap, args.heatmap_format, args.no_heatmap_phenotype_clustering, args.no_heatmap_sample_clustering, args.gene_gff_type, args.primary_models, args.secondary_models) File "/lustre/groups/cbi/ecastron/Katterinne/Psychrobacter_glacincola/Traitar/pyc1traitar/bin/traitar", line 71, in __init__ self.s2f = self.parse_sample_f() File "/lustre/groups/cbi/ecastron/Katterinne/Psychrobacter_glacincola/Traitar/pyc1traitar/bin/traitar", line 133, in parse_sample_f if not self._special_match(i): File "/lustre/groups/cbi/ecastron/Katterinne/Psychrobacter_glacincola/Traitar/pyc1traitar/bin/traitar", line 111, in _special_match return not bool(search(strg)) TypeError: expected string or buffer
I hope this can be fixed and be useful for other users.
Thank you very much!
Dear Aaron Weimann,
Thank you for develop Traitar, I think this program would be very useful to better understand the biological meaning of our data.
I have a issue that I can not understand when I run traitar. I have succefully installed traitar using python2.7 virtualenv. But when I run traitar I get the following...
traitar phenotype genus_in genus_sample-file from_nucleotides genus_outTraceback (most recent call last): File "/lustre/groups/cbi/ecastron/Katterinne/Psychrobacter_glacincola/Traitar/pyc1traitar/bin/traitar", line 492, in <module> args.func(args) File "/lustre/groups/cbi/ecastron/Katterinne/Psychrobacter_glacincola/Traitar/pyc1traitar/bin/traitar", line 32, in phenolyze p = Traitar(args.input_dir, args.output_dir, args.sample2file, args.cpus, args.rearrange_heatmap, args.heatmap_format, args.no_heatmap_phenotype_clustering, args.no_heatmap_sample_clustering, args.gene_gff_type, args.primary_models, args.secondary_models) File "/lustre/groups/cbi/ecastron/Katterinne/Psychrobacter_glacincola/Traitar/pyc1traitar/bin/traitar", line 71, in __init__ self.s2f = self.parse_sample_f() File "/lustre/groups/cbi/ecastron/Katterinne/Psychrobacter_glacincola/Traitar/pyc1traitar/bin/traitar", line 133, in parse_sample_f if not self._special_match(i): File "/lustre/groups/cbi/ecastron/Katterinne/Psychrobacter_glacincola/Traitar/pyc1traitar/bin/traitar", line 111, in _special_match return not bool(search(strg)) TypeError: expected string or bufferI hope this can be fixed and be useful for other users.
Thank you very much!