Rename repositories/protocols to match new noaa-omics-primers target names

[lukenoaa]

For example:

protocol-pcr-ssu16sv4v5-parada -> NOAA-AOML-BeBOP-Protocol-PCR-Bacteria-16S-V4V5-Parada

[lukenoaa]

The assay_name could be the Zenodo DOI generated when (this version of) the BeBOP protocol is published on Zenodo.