From ef67798b9fd165c6e8f3baa322bc1992e064c6f9 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Wed, 3 Sep 2025 22:49:34 +0100 Subject: [PATCH 1/4] Update cython from 0.29.23 to 3.1.3 --- requirements_dev.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements_dev.txt b/requirements_dev.txt index 6380aca..efba511 100644 --- a/requirements_dev.txt +++ b/requirements_dev.txt @@ -1,4 +1,4 @@ -Cython==0.29.23 +Cython==3.1.3 numpy==1.21.0 pysam==0.16.0.1 nose==1.3.7 From 2d99ab56ab883cae2cc43affcd14dd8111533b2e Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Wed, 3 Sep 2025 22:49:34 +0100 Subject: [PATCH 2/4] Update numpy from 1.21.0 to 2.3.2 --- requirements_dev.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements_dev.txt b/requirements_dev.txt index efba511..50de791 100644 --- a/requirements_dev.txt +++ b/requirements_dev.txt @@ -1,5 +1,5 @@ Cython==3.1.3 -numpy==1.21.0 +numpy==2.3.2 pysam==0.16.0.1 nose==1.3.7 tables==3.6.1 From 5beff6139951cf012c9bcefd40e84bf1ec6a1864 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Wed, 3 Sep 2025 22:49:35 +0100 Subject: [PATCH 3/4] Update pysam from 0.16.0.1 to 0.23.3 --- requirements_dev.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements_dev.txt b/requirements_dev.txt index 50de791..84d0bb7 100644 --- a/requirements_dev.txt +++ b/requirements_dev.txt @@ -1,5 +1,5 @@ Cython==3.1.3 numpy==2.3.2 -pysam==0.16.0.1 +pysam==0.23.3 nose==1.3.7 tables==3.6.1 From 0bb2d69753ec2de96bd5fe7c13b418a172b0f024 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Wed, 3 Sep 2025 22:49:35 +0100 Subject: [PATCH 4/4] Update tables from 3.6.1 to 3.10.2 --- requirements_dev.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements_dev.txt b/requirements_dev.txt index 84d0bb7..f4e00a6 100644 --- a/requirements_dev.txt +++ b/requirements_dev.txt @@ -2,4 +2,4 @@ Cython==3.1.3 numpy==2.3.2 pysam==0.23.3 nose==1.3.7 -tables==3.6.1 +tables==3.10.2